{"id":50699195,"url":"https://github.com/theairbend3r/mice-memory-response","last_synced_at":"2026-06-09T08:03:35.267Z","repository":{"id":80713017,"uuid":"385998317","full_name":"theairbend3r/mice-memory-response","owner":"theairbend3r","description":"Effect of memory on current response in mice using methods from computational neuroscience and machine learning.","archived":false,"fork":false,"pushed_at":"2026-05-10T20:19:40.000Z","size":18590,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2026-05-10T22:23:26.576Z","etag":null,"topics":["computational-neuroscience","data-analysis","data-science","machine-learning","neuroscience","python"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/theairbend3r.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2021-07-14T16:04:04.000Z","updated_at":"2026-05-10T20:19:44.000Z","dependencies_parsed_at":null,"dependency_job_id":"25fc8ce3-ae8b-45db-afdf-ccd70d252352","html_url":"https://github.com/theairbend3r/mice-memory-response","commit_stats":null,"previous_names":["theairbend3r/mice-memory-response"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/theairbend3r/mice-memory-response","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/theairbend3r%2Fmice-memory-response","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/theairbend3r%2Fmice-memory-response/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/theairbend3r%2Fmice-memory-response/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/theairbend3r%2Fmice-memory-response/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/theairbend3r","download_url":"https://codeload.github.com/theairbend3r/mice-memory-response/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/theairbend3r%2Fmice-memory-response/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34096955,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-09T02:00:06.510Z","response_time":63,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["computational-neuroscience","data-analysis","data-science","machine-learning","neuroscience","python"],"created_at":"2026-06-09T08:03:34.386Z","updated_at":"2026-06-09T08:03:35.262Z","avatar_url":"https://github.com/theairbend3r.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Mice Memory Response\n\n[![Documentation Status](https://readthedocs.org/projects/spiking-brains/badge/?version=latest)](https://spiking-brains.readthedocs.io/en/latest/?badge=latest)\n\nStudy the effect of memory on current response (to behavioral tasks) in mice using methods from computational neuroscience and machine learning.\n\n![Spiking Brains](./assets/spiking-brains.png)\n\n## Installation\n\n### Clone the repository.\n\n```sh\ngit clone https://github.com/theairbend3r/spiking-brains.git\n```\n\n### Install the packages.\n\nUsing Conda.\n\n```sh\nconda env create -f spiking-brains.yml\n```\n\nUsing Pip.\n\n```sh\npip install requirements.txt\n```\n\n## Content\n\nThe modules reside in the package `./app`.\n\nFollowing are the notebooks that use function from `./app/` to perform analysis.\n\n1. Exploratory Analysis\n2. Behaviour Analysis\n3. Neurons Analysis\n4. Phenomena Analysis\n5. Machine Learning Modelling\n\n## Experiment and Analysis\n\n### Goal\n\n- Study the effect of memory on current response (to behavioral tasks) in mice using machine learning.\n\n### Hypothesis\n\n- Previous responses to visual stimulus, by the mouse, may affect its present response.\n\n### Dataset\n\n- A subset of the Steinmetz dataset (Steinmetz et al, 2019).\n- It contains 39 sessions from 10 mice.\n- The mice were shown 2 images and had to determine which image had the highest contrast.\n\n### Method\n\n- Train a logistic regression model to predict the mouse's response given the following input variables for `current timestamp - 1`.\n  - Feedback type\n  - Feedback time\n  - Reward time\n  - Response type\n  - Contrast left\n  - Contrast right\n- Tune the model and use 8-fold cross validation to gauge accuracy.\n- Plot the confusion matrix to compare the actual mouse response vs the model's response.\n- Analyse the beta-weights per input variable to see its effect on the response.\n\n### Results\n\n- See `05_modelling.ipynb` notebook.\n\n## Meta\n\nAkshaj Verma – [@theairbend3r](https://twitter.com/theairbend3r).\n\nDistributed under the GNU GPL-V3 license. See `LICENSE` for more information.\n\n[https://github.com/theairbend3r/spiking-brains](https://github.com/theairbend3r/spiking-brains)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftheairbend3r%2Fmice-memory-response","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ftheairbend3r%2Fmice-memory-response","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftheairbend3r%2Fmice-memory-response/lists"}