{"id":20126621,"url":"https://github.com/thefloatingstring/adage","last_synced_at":"2026-03-19T14:02:38.193Z","repository":{"id":70750566,"uuid":"170342680","full_name":"TheFloatingString/Adage","owner":"TheFloatingString","description":"2019 Canada-Wide Science Fair project: a tool to identify transcription factors (activating genes) based on target genes","archived":false,"fork":false,"pushed_at":"2024-03-11T21:05:47.000Z","size":14585,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-03-02T21:17:01.799Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/TheFloatingString.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-02-12T15:34:13.000Z","updated_at":"2024-03-11T21:06:12.000Z","dependencies_parsed_at":null,"dependency_job_id":"fe87f7c1-0ca2-4279-82e1-b253b56da09b","html_url":"https://github.com/TheFloatingString/Adage","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/TheFloatingString/Adage","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TheFloatingString%2FAdage","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TheFloatingString%2FAdage/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TheFloatingString%2FAdage/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TheFloatingString%2FAdage/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/TheFloatingString","download_url":"https://codeload.github.com/TheFloatingString/Adage/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TheFloatingString%2FAdage/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":30113122,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-03-05T03:40:26.266Z","status":"ssl_error","status_checked_at":"2026-03-05T03:39:15.902Z","response_time":93,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-13T20:17:04.338Z","updated_at":"2026-03-05T07:03:41.972Z","avatar_url":"https://github.com/TheFloatingString.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":"# ADAGE - ADaptive Analysis of Genetic Elements\r\n\r\nThis ensemble model combines CNN's with chromosomal locations and genomic graph traversals to identify transcription factors (\"activator genes\") that are responsible for specific cellular functions (such as CNS neuron regeneration, or suppression for a specific type of tumor).\r\n\r\nPresented at the 2019 Canada-Wide Science Fair, and at the 2019 Sanofi Biogenius (Canadian Final).\r\n\r\n### Quickstart\r\n\r\n```\r\npip install -r requirements.txt\r\npython app.py\r\n```\r\n\r\n### Potential Runtime Issues\r\n\r\nNote: as of January 4, 2023, there are potential runtime issues due to Python dependency versioning and internal model dimension changes.\r\n\r\nPlease feel free to report any runtime errors via Issues on the GitHub repo.\r\n\r\nThank you in advance!\r\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fthefloatingstring%2Fadage","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fthefloatingstring%2Fadage","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fthefloatingstring%2Fadage/lists"}