{"id":30063705,"url":"https://github.com/thejacksonlaboratory/mbiome_containers","last_synced_at":"2026-05-18T06:37:22.138Z","repository":{"id":91648986,"uuid":"232586289","full_name":"TheJacksonLaboratory/mbiome_containers","owner":"TheJacksonLaboratory","description":"Docker and Singular container definition files, as used by the MbiomeCore at JAX-GM","archived":false,"fork":false,"pushed_at":"2020-03-30T16:51:29.000Z","size":35,"stargazers_count":3,"open_issues_count":0,"forks_count":0,"subscribers_count":0,"default_branch":"master","last_synced_at":"2026-01-30T07:33:54.048Z","etag":null,"topics":["containers","docker","microbiome","singularity"],"latest_commit_sha":null,"homepage":"","language":"Shell","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/TheJacksonLaboratory.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-01-08T14:48:56.000Z","updated_at":"2023-11-01T05:20:49.000Z","dependencies_parsed_at":"2023-03-13T10:03:07.773Z","dependency_job_id":null,"html_url":"https://github.com/TheJacksonLaboratory/mbiome_containers","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/TheJacksonLaboratory/mbiome_containers","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TheJacksonLaboratory%2Fmbiome_containers","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TheJacksonLaboratory%2Fmbiome_containers/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TheJacksonLaboratory%2Fmbiome_containers/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TheJacksonLaboratory%2Fmbiome_containers/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/TheJacksonLaboratory","download_url":"https://codeload.github.com/TheJacksonLaboratory/mbiome_containers/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TheJacksonLaboratory%2Fmbiome_containers/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":33167779,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-18T05:43:36.989Z","status":"ssl_error","status_checked_at":"2026-05-18T05:43:19.133Z","response_time":71,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["containers","docker","microbiome","singularity"],"created_at":"2025-08-08T04:47:44.686Z","updated_at":"2026-05-18T06:37:22.133Z","avatar_url":"https://github.com/TheJacksonLaboratory.png","language":"Shell","funding_links":[],"categories":[],"sub_categories":[],"readme":"## Containers Definition Files\n### for JAX-GM Microbiome Core\n\nEach app used in our analysis pipelines will have its own folder, containing\na `Dockerfile` and the `Docker` and converted `Singularity` images.\n\n### Image Build Example\nBuild a `docker` image from a `Dockerfile`, push it to docker hub,\nthen use `singularity` to pull and convert it into a `.sif` image file.\n```\n    DockerAccount=\"my_username\"\n    ImageName=\"flash_assembler\"\n    ImageTag=\"1.2.11\"\n    docker build -t ${DockerAccount}/${ImageName}:${ImageTag} ${ImageName}/\n    # test resulting image's container commands...\n    docker push ${DockerAccount}/${ImageName}:${ImageTag}\n    singularity pull ${ImageName}/${ImageName}.sif docker://${DockerAccount}/${ImageName}:${ImageTag}\n```\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fthejacksonlaboratory%2Fmbiome_containers","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fthejacksonlaboratory%2Fmbiome_containers","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fthejacksonlaboratory%2Fmbiome_containers/lists"}