{"id":18380349,"url":"https://github.com/themattinthehatt/rlvm","last_synced_at":"2025-04-11T15:20:46.470Z","repository":{"id":106688651,"uuid":"63563975","full_name":"themattinthehatt/rlvm","owner":"themattinthehatt","description":"MATLAB implementation of a rectified latent variable model for analysis of neural time series data.","archived":false,"fork":false,"pushed_at":"2017-09-26T18:50:38.000Z","size":217,"stargazers_count":3,"open_issues_count":0,"forks_count":4,"subscribers_count":4,"default_branch":"v2.0","last_synced_at":"2025-02-15T23:28:18.891Z","etag":null,"topics":["latent-variable-models","neural-data-analysis","neuroscience"],"latest_commit_sha":null,"homepage":null,"language":"Matlab","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/themattinthehatt.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-07-18T02:26:48.000Z","updated_at":"2024-09-05T08:44:57.000Z","dependencies_parsed_at":"2023-04-03T20:54:18.350Z","dependency_job_id":null,"html_url":"https://github.com/themattinthehatt/rlvm","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/themattinthehatt%2Frlvm","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/themattinthehatt%2Frlvm/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/themattinthehatt%2Frlvm/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/themattinthehatt%2Frlvm/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/themattinthehatt","download_url":"https://codeload.github.com/themattinthehatt/rlvm/tar.gz/refs/heads/v2.0","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248429129,"owners_count":21101786,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["latent-variable-models","neural-data-analysis","neuroscience"],"created_at":"2024-11-06T00:42:30.513Z","updated_at":"2025-04-11T15:20:46.434Z","avatar_url":"https://github.com/themattinthehatt.png","language":"Matlab","funding_links":[],"categories":[],"sub_categories":[],"readme":"## Rectified Latent Variable Model (RLVM) \n\nThe RLVM is a latent variable model developed to study large populations of simultaneously recorded neurons. \n\nFor more information regarding the mathematical formulation of the model, see the preprint on [bioRxiv](http://biorxiv.org/content/early/2016/08/29/072173). The `doc` directory contains scripts that show how to use the model on several simulated datasets. \n\nThe RLVM optimizes model parameters using [Mark Schmidt's](http://www.cs.ubc.ca/~schmidtm/) minFunc package, which is located in the `lib` directory and should work out of the box. If not you may need to run the mexAll.m file from the `lib/minFunc_2012` directory.\n\n### Update!\n\nThis is the branch for version 2.0, which contains the following new features:\n- autoencoder can now contain an arbitrary number of layers\n- refactoring of model structure makes managing large models easier\n- stimulus subunits can now be shared across cells\n\nv2.0 is still not fully tested or documented. See the master branch for the most recent stable version.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fthemattinthehatt%2Frlvm","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fthemattinthehatt%2Frlvm","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fthemattinthehatt%2Frlvm/lists"}