{"id":23489056,"url":"https://github.com/thorstenhater/cantata","last_synced_at":"2025-04-15T03:10:35.434Z","repository":{"id":234401957,"uuid":"775471097","full_name":"thorstenhater/cantata","owner":"thorstenhater","description":"Arbor adaptor for SONATA","archived":false,"fork":false,"pushed_at":"2025-03-26T21:08:42.000Z","size":2915,"stargazers_count":1,"open_issues_count":1,"forks_count":2,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-03-26T22:24:01.539Z","etag":null,"topics":["neuroscience","simulation"],"latest_commit_sha":null,"homepage":"","language":"Rust","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/thorstenhater.png","metadata":{"files":{"readme":"Readme.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-03-21T13:02:15.000Z","updated_at":"2024-11-14T15:42:58.000Z","dependencies_parsed_at":null,"dependency_job_id":"34a732be-4419-429f-8fa8-5f13a58a48e1","html_url":"https://github.com/thorstenhater/cantata","commit_stats":null,"previous_names":["thorstenhater/cantata"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thorstenhater%2Fcantata","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thorstenhater%2Fcantata/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thorstenhater%2Fcantata/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thorstenhater%2Fcantata/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/thorstenhater","download_url":"https://codeload.github.com/thorstenhater/cantata/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248997079,"owners_count":21195799,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["neuroscience","simulation"],"created_at":"2024-12-24T23:25:45.210Z","updated_at":"2025-04-15T03:10:35.414Z","avatar_url":"https://github.com/thorstenhater.png","language":"Rust","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Cantata\n\nTranslate SONATA simulations into Arbor simulation bundles. \n\n## Dependencies\n\nWe require a recent version of Rust (1.80), Python (3.10 or later), and HDF5\n(development, i.e. headers and libraries). Acquiring some examples in SONATA\nwill be helpful; you can do so here\n\nhttps://github.com/AllenInstitute/sonata\n\nor here\n\nhttps://github.com/AllenInstitute/bmtk\n\n## Setup (stable)\n\n``` sh\ncargo install cantata\n```\nRun a test\n``` sh\ncantata build path/to/sonata/simulation.json out-dir\ncd out-dir\npython3 main.py\n```\n\nThis will perform the translation and create a working simulation in the output\ndirectory `out-dir`. Running the simulation will generate the requested outputs\n(spikes and traces) in `out-dir/out`. You may want/need to tweak the simulation.\n\nThere is a convenience wrapper that does all of the above and will construct and\n    execute the simulation in `simulation.sim`.\n\n```sh\ncantata run path/to/sonata/simulation.json\n```\n\n## Setup (dev)\n\n``` sh\ngit clone https://github.com/thorstenhater/cantata.git\n```\nRun a test\n``` sh\ncd cantata\ncargo run -- build path/to/sonata/simulation.json out-dir\ncd out-dir\npython3 main.py\n```\nThis will perform the translation and create a working simulation in the output\ndirectory `out-dir`. Running the simulation will generate the requested outputs\n(spikes and traces) in `out-dir/out`. You may want/need to tweak the simulation.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fthorstenhater%2Fcantata","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fthorstenhater%2Fcantata","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fthorstenhater%2Fcantata/lists"}