{"id":18569473,"url":"https://github.com/timeu/gwapp","last_synced_at":"2025-08-09T06:10:28.372Z","repository":{"id":5913016,"uuid":"7132237","full_name":"timeu/GWAPP","owner":"timeu","description":"GWAPP ","archived":false,"fork":false,"pushed_at":"2020-10-13T03:49:00.000Z","size":60777,"stargazers_count":7,"open_issues_count":1,"forks_count":3,"subscribers_count":7,"default_branch":"master","last_synced_at":"2024-12-26T13:26:13.907Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/timeu.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2012-12-12T15:19:51.000Z","updated_at":"2023-12-18T04:13:46.000Z","dependencies_parsed_at":"2022-07-29T18:19:02.878Z","dependency_job_id":null,"html_url":"https://github.com/timeu/GWAPP","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/timeu%2FGWAPP","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/timeu%2FGWAPP/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/timeu%2FGWAPP/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/timeu%2FGWAPP/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/timeu","download_url":"https://codeload.github.com/timeu/GWAPP/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":239301995,"owners_count":19616451,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-06T22:34:13.863Z","updated_at":"2025-02-17T14:13:37.185Z","avatar_url":"https://github.com/timeu.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":"GWAPP -  A Web Application for Genome-wide Association Mapping in A. thaliana\n=====\n\n## Overview\n\nGWAPP is a Standalone GWAS Web Application that enables reseachers working with Arabidopsis thaliana to do Genome Wide Association Mapping (GWAS) on their phenotypes. \n\nIt can be accessed by following site: http://gwapp.gmi.oeaw.ac.at. \n\n## VM Image \n\nWe also provide a production ready virtual box image of GWAPP which can be downloaded and run locally on any workstation or vmware cluster. All required packages are pre-configured. The machine was built on Ubuntu LTS 12.04 with an appropriate set of packages. We package the VM as an OVA template that should be importable into all of vmware's products and for Oracle's VirtualBox solution. \n\n\n\n## DOWNLOAD \n\nhttp://gridftp.gmi.oeaw.ac.at/gwas-vm-shipping-2.ova\n\n## Configuration \u0026 Settings:\n\nThe VM has some default configuration settings and paths:\n\n* Web-application: /srv/gwas-app/gwas-web-app\n* GWAS library: /srv/atgwas \n* Data-folder: /srv/data\n* Genotype data: /srv/data/genotype\n* HDF5 result files (per user): /srv/data/datasets\n* Username: root\n* Password: rootroot\n \nThe `CherryPy` application server runs on port `8080` and the `nginx` web-server runs on the default port `8081` and forwards the calls to the `CherryPy` application server. \nSupervisord will make sure that the `CherryPy` application server is started when the vmware image boots up. \n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftimeu%2Fgwapp","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ftimeu%2Fgwapp","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftimeu%2Fgwapp/lists"}