{"id":27159450,"url":"https://github.com/timtreis/202504_workshop_gscn","last_synced_at":"2025-04-10T02:42:17.173Z","repository":{"id":286460360,"uuid":"961463443","full_name":"timtreis/202504_workshop_GSCN","owner":"timtreis","description":null,"archived":false,"fork":false,"pushed_at":"2025-04-06T15:45:13.000Z","size":57366,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"gh-pages","last_synced_at":"2025-04-06T16:35:37.836Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Jupyter 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href=\"day_1/nb2_preprocessing.html\"\u003eDimensionality reduction, clustering and annotation\u003c/a\u003e\u003c/li\u003e\n\n\n\n\n\n\n\n\n\n\n\n\u003cli class=\"toctree-l2\"\u003e\u003ca class=\"reference internal\" href=\"day_1/nb3_batch_correction.html\"\u003eBatch Correction\u003c/a\u003e\u003c/li\u003e\n\n\n\n\n\n\u003cli class=\"toctree-l2\"\u003e\u003ca class=\"reference internal\" href=\"day_1/nb4_downstream_analysis.html\"\u003eDownstream Analysis\u003c/a\u003e\u003c/li\u003e\n\u003cli class=\"toctree-l2\"\u003e\u003ca class=\"reference internal\" href=\"day_1/nb5_trajectory_inference.html\"\u003eIntroduction\u003c/a\u003e\u003c/li\u003e\n\n\n\u003c/ul\u003e\n\u003c/details\u003e\u003c/li\u003e\n\u003cli class=\"toctree-l1 has-children\"\u003e\u003ca class=\"reference internal\" href=\"day_2/README.html\"\u003eDay 2\u003c/a\u003e\u003cdetails\u003e\u003csummary\u003e\u003cspan class=\"toctree-toggle\" role=\"presentation\"\u003e\u003ci class=\"fa-solid 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\u003c/span\u003e\n\u003cspan class=\"btn__text-container\"\u003eSuggest edit\u003c/span\u003e\n\u003c/a\u003e\n\u003c/li\u003e\n      \n      \n      \n      \n      \u003cli\u003e\u003ca href=\"https://github.com/scverse/202504_workshop_GSCN/issues/new?title=Issue%20on%20page%20%2FREADME.html\u0026body=Your%20issue%20content%20here.\" target=\"_blank\"\n   class=\"btn btn-sm btn-source-issues-button dropdown-item\"\n   title=\"Open an issue\"\n   data-bs-placement=\"left\" data-bs-toggle=\"tooltip\"\n\u003e\n  \n\n\u003cspan class=\"btn__icon-container\"\u003e\n  \u003ci class=\"fas fa-lightbulb\"\u003e\u003c/i\u003e\n  \u003c/span\u003e\n\u003cspan class=\"btn__text-container\"\u003eOpen issue\u003c/span\u003e\n\u003c/a\u003e\n\u003c/li\u003e\n      \n  \u003c/ul\u003e\n\u003c/div\u003e\n\n\n\n\n\n\n\u003cdiv class=\"dropdown dropdown-download-buttons\"\u003e\n  \u003cbutton class=\"btn dropdown-toggle\" type=\"button\" data-bs-toggle=\"dropdown\" aria-expanded=\"false\" aria-label=\"Download this page\"\u003e\n    \u003ci class=\"fas fa-download\"\u003e\u003c/i\u003e\n  \u003c/button\u003e\n  \u003cul class=\"dropdown-menu\"\u003e\n      \n      \n      \n      \u003cli\u003e\u003ca href=\"_sources/README.md\" target=\"_blank\"\n   class=\"btn btn-sm btn-download-source-button dropdown-item\"\n   title=\"Download source file\"\n   data-bs-placement=\"left\" data-bs-toggle=\"tooltip\"\n\u003e\n  \n\n\u003cspan class=\"btn__icon-container\"\u003e\n  \u003ci class=\"fas fa-file\"\u003e\u003c/i\u003e\n  \u003c/span\u003e\n\u003cspan class=\"btn__text-container\"\u003e.md\u003c/span\u003e\n\u003c/a\u003e\n\u003c/li\u003e\n      \n      \n      \n      \n      \u003cli\u003e\n\u003cbutton onclick=\"window.print()\"\n  class=\"btn btn-sm btn-download-pdf-button dropdown-item\"\n  title=\"Print to PDF\"\n  data-bs-placement=\"left\" data-bs-toggle=\"tooltip\"\n\u003e\n  \n\n\u003cspan class=\"btn__icon-container\"\u003e\n  \u003ci class=\"fas fa-file-pdf\"\u003e\u003c/i\u003e\n  \u003c/span\u003e\n\u003cspan class=\"btn__text-container\"\u003e.pdf\u003c/span\u003e\n\u003c/button\u003e\n\u003c/li\u003e\n      \n  \u003c/ul\u003e\n\u003c/div\u003e\n\n\n\n\n\u003cbutton onclick=\"toggleFullScreen()\"\n  class=\"btn btn-sm btn-fullscreen-button\"\n  title=\"Fullscreen mode\"\n  data-bs-placement=\"bottom\" data-bs-toggle=\"tooltip\"\n\u003e\n  \n\n\u003cspan class=\"btn__icon-container\"\u003e\n  \u003ci class=\"fas fa-expand\"\u003e\u003c/i\u003e\n  \u003c/span\u003e\n\n\u003c/button\u003e\n\n\n\n\u003cscript\u003e\ndocument.write(`\n  \u003cbutton class=\"btn btn-sm nav-link pst-navbar-icon theme-switch-button\" title=\"light/dark\" aria-label=\"light/dark\" data-bs-placement=\"bottom\" data-bs-toggle=\"tooltip\"\u003e\n    \u003ci class=\"theme-switch fa-solid fa-sun fa-lg\" data-mode=\"light\"\u003e\u003c/i\u003e\n    \u003ci class=\"theme-switch fa-solid fa-moon fa-lg\" data-mode=\"dark\"\u003e\u003c/i\u003e\n    \u003ci class=\"theme-switch fa-solid fa-circle-half-stroke fa-lg\" data-mode=\"auto\"\u003e\u003c/i\u003e\n  \u003c/button\u003e\n`);\n\u003c/script\u003e\n\n\n\u003cscript\u003e\ndocument.write(`\n  \u003cbutton class=\"btn btn-sm pst-navbar-icon search-button search-button__button\" title=\"Search\" aria-label=\"Search\" data-bs-placement=\"bottom\" data-bs-toggle=\"tooltip\"\u003e\n    \u003ci class=\"fa-solid fa-magnifying-glass fa-lg\"\u003e\u003c/i\u003e\n  \u003c/button\u003e\n`);\n\u003c/script\u003e\n\u003cbutton class=\"sidebar-toggle secondary-toggle btn btn-sm\" title=\"Toggle secondary sidebar\" data-bs-placement=\"bottom\" data-bs-toggle=\"tooltip\"\u003e\n    \u003cspan class=\"fa-solid fa-list\"\u003e\u003c/span\u003e\n\u003c/button\u003e\n\u003c/div\u003e\u003c/div\u003e\n      \n    \u003c/div\u003e\n  \n\u003c/div\u003e\n\u003c/div\u003e\n              \n              \n\n\u003cdiv id=\"jb-print-docs-body\" class=\"onlyprint\"\u003e\n    \u003ch1\u003escverse workshop in collaboration with the GSCN\u003c/h1\u003e\n    \u003c!-- Table of contents --\u003e\n    \u003cdiv id=\"print-main-content\"\u003e\n        \u003cdiv id=\"jb-print-toc\"\u003e\n            \n            \u003cdiv\u003e\n                \u003ch2\u003e Contents \u003c/h2\u003e\n            \u003c/div\u003e\n            \u003cnav aria-label=\"Page\"\u003e\n                \u003cul class=\"visible nav section-nav flex-column\"\u003e\n\u003cli class=\"toc-h2 nav-item toc-entry\"\u003e\u003ca class=\"reference internal nav-link\" href=\"#before-the-event\"\u003eBefore the event\u003c/a\u003e\u003cul class=\"nav section-nav flex-column\"\u003e\n\u003cli class=\"toc-h3 nav-item toc-entry\"\u003e\u003ca class=\"reference internal nav-link\" href=\"#tech-setup\"\u003eTech setup\u003c/a\u003e\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/li\u003e\n\u003cli class=\"toc-h2 nav-item toc-entry\"\u003e\u003ca class=\"reference internal nav-link\" href=\"#syllabus\"\u003eSyllabus\u003c/a\u003e\u003c/li\u003e\n\u003c/ul\u003e\n            \u003c/nav\u003e\n        \u003c/div\u003e\n    \u003c/div\u003e\n\u003c/div\u003e\n\n              \n                \n\u003cdiv id=\"searchbox\"\u003e\u003c/div\u003e\n                \u003carticle class=\"bd-article\"\u003e\n                  \n  \u003csection class=\"tex2jax_ignore mathjax_ignore\" id=\"scverse-workshop-in-collaboration-with-the-gscn\"\u003e\n\u003ch1\u003escverse workshop in collaboration with the GSCN\u003ca class=\"headerlink\" href=\"#scverse-workshop-in-collaboration-with-the-gscn\" title=\"Link to this heading\"\u003e#\u003c/a\u003e\u003c/h1\u003e\n\u003cp\u003eWelcome to the GSCN Workshop materials! This book contains the workshop materials organized by day:\u003c/p\u003e\n\u003cul class=\"simple\"\u003e\n\u003cli\u003e\u003cp\u003e\u003ca class=\"reference internal\" href=\"day_1/README.html\"\u003e\u003cspan class=\"std std-doc\"\u003eDay 1\u003c/span\u003e\u003c/a\u003e\u003c/p\u003e\u003c/li\u003e\n\u003cli\u003e\u003cp\u003e\u003ca class=\"reference internal\" href=\"day_2/README.html\"\u003e\u003cspan class=\"std std-doc\"\u003eDay 2\u003c/span\u003e\u003c/a\u003e\u003c/p\u003e\u003c/li\u003e\n\u003cli\u003e\u003cp\u003e\u003ca class=\"reference internal\" href=\"day_3/README.html\"\u003e\u003cspan class=\"std std-doc\"\u003eDay 3\u003c/span\u003e\u003c/a\u003e\u003c/p\u003e\u003c/li\u003e\n\u003c/ul\u003e\n\u003cp\u003eEach day contains its own set of notebooks and materials for the workshop.\u003c/p\u003e\n\u003csection id=\"before-the-event\"\u003e\n\u003ch2\u003eBefore the event\u003ca class=\"headerlink\" href=\"#before-the-event\" title=\"Link to this heading\"\u003e#\u003c/a\u003e\u003c/h2\u003e\n\u003csection id=\"tech-setup\"\u003e\n\u003ch3\u003eTech setup\u003ca class=\"headerlink\" href=\"#tech-setup\" title=\"Link to this heading\"\u003e#\u003c/a\u003e\u003c/h3\u003e\n\u003cp\u003eIn addition to the actual workshop, we offer two pre-workshop sessions designed to help participants with any issues installing software required for the workshop. During these, we also encourage participants to ask questions about basic Python/Jupyter Notebook usages (the notebook discussed in these sessions can be found \u003ca class=\"reference external\" href=\"https://github.com/scverse/202504_workshop_GSCN/blob/main/misc/pre_workshop_session.ipynb\"\u003ehere\u003c/a\u003e). The two sessions take place on:\u003c/p\u003e\n\u003cul class=\"simple\"\u003e\n\u003cli\u003e\u003cp\u003eWednesday (02.04.2025), 15:00 - 17:00 CET\u003c/p\u003e\u003c/li\u003e\n\u003cli\u003e\u003cp\u003eThursday (03.04.2025), 15:30 - 17:30 CET\u003c/p\u003e\u003c/li\u003e\n\u003c/ul\u003e\n\u003cp\u003eThe Zoom links to these events can be found in the mail sent on Sunday, 30.03.2025. If you have any other questions, please direct them to the \u003ca class=\"reference external\" href=\"https://scverse.zulipchat.com/#narrow/channel/493335-2025-04.3A-Workshop-GSCN/topic/pre-workshop.20support/with/509718455\"\u003e2025-04: Workshop GSCN \u0026gt; pre-workshop support\u003c/a\u003e Zulip channel.\u003c/p\u003e\n\u003c/section\u003e\n\u003c/section\u003e\n\u003csection id=\"syllabus\"\u003e\n\u003ch2\u003eSyllabus\u003ca class=\"headerlink\" href=\"#syllabus\" title=\"Link to this heading\"\u003e#\u003c/a\u003e\u003c/h2\u003e\n\u003cp\u003e\u003cem\u003eNote: Schedule subject to minor adjustments.\u003c/em\u003e\u003c/p\u003e\n\u003cdiv class=\"pst-scrollable-table-container\"\u003e\u003ctable class=\"table\"\u003e\n\u003cthead\u003e\n\u003ctr class=\"row-odd\"\u003e\u003cth class=\"head\"\u003e\u003cp\u003eDate\u003c/p\u003e\u003c/th\u003e\n\u003cth class=\"head\"\u003e\u003cp\u003eTime\u003c/p\u003e\u003c/th\u003e\n\u003cth class=\"head\"\u003e\u003cp\u003eActivity\u003c/p\u003e\u003c/th\u003e\n\u003c/tr\u003e\n\u003c/thead\u003e\n\u003ctbody\u003e\n\u003ctr class=\"row-even\"\u003e\u003ctd\u003e\u003cp\u003e\u003cstrong\u003eMonday, 07.04.2025\u003c/strong\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e09:00 – 09:15\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eWelcome \u0026amp; Introduction to the Workshop\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-odd\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e09:15 – 10:00\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eTalk: “An in-depth look at AnnData” by \u003ca class=\"reference external\" href=\"https://github.com/ilan-gold\"\u003eIlan Gold\u003c/a\u003e\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-even\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e10:00 – 11:30\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e1) Basic pre-processing of scRNA-seq data\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-odd\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e2) Batch effect correction\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-even\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e3) Downstream analysis\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-odd\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e11:30 - 12:00\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eHands-on coding \u0026amp; Troubleshooting\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-even\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e12:00 – 13:00\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eLunch\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-odd\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e13:00 – 13:30\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eIntro to “Trajectory analysis”\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-even\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e13:30 – 13:40\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eBreak\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-odd\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e13:40 – 15:20\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eTrajectory analysis\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-even\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e15:20 – 15:40\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eBreak\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-odd\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e15:40 – 17:30\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eTrajectory analysis\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-even\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e19:00 - tbd\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eDinner at \u003ca class=\"reference external\" href=\"https://www.tripadvisor.de/Restaurant_Review-g187323-d2456707-Reviews-Porta_Nova-Berlin.html\"\u003ePorta Nova\u003c/a\u003e (\u003ca class=\"reference external\" href=\"https://maps.app.goo.gl/wFXHXyAk1Fdkpf658\"\u003eRobert-Koch-Platz 12\u003c/a\u003e)\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-odd\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-even\"\u003e\u003ctd\u003e\u003cp\u003e\u003cstrong\u003eTuesday, 08.04.2025\u003c/strong\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e09:00 – 09:30\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eRecap and Q\u0026amp;A, tech setup for spatial workshop\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-odd\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e09:30 – 10:00\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eTalk: “Clonal dynamics and mitochondrial genetics through the\u003cbr\u003elens of single-cell multi-omics” by \u003ca class=\"reference external\" href=\"https://www.mdc-berlin.de/de/person/dr-med-dr-rer-nat-leif-s-ludwig\"\u003eLeif Ludwig\u003c/a\u003e\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-even\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e10:00 – 11:30\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e1) Ligand-receptor interaction analysis\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-odd\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e2) Differential cellular abundance\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-even\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e11:30 - 12:00\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eHands-on coding \u0026amp; Troubleshooting\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-odd\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e12:00 – 13:00\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eLunch\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-even\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e13:00 – 13:30\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eIntro to “Spatial Omics”\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-odd\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e13:30 – 13:40\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eBreak\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-even\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e13:40 – 15:20\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eSpatial preprocessing \u0026amp; analysis\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-odd\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e15:20 – 15:40\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eBreak\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-even\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e15:40 – 17:30\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eSpatial preprocessing \u0026amp; analysis\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-odd\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e20:00 - tbd\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eDinner (self-organised)\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-even\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-odd\"\u003e\u003ctd\u003e\u003cp\u003e\u003cstrong\u003eWednesday, 09.042025\u003c/strong\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e09:00 – 09:30\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eTalk: “Spatiotemporal dynamics of tumor development in a novel\u003cbr\u003etriple-negative breast cancer model” by \u003ca class=\"reference internal\" href=\"#www.linkedin.com/in/tancredi-massimo-pentimalli\"\u003e\u003cspan class=\"xref myst\"\u003eTancredi Massimo Pentimalli\u003c/span\u003e\u003c/a\u003e\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-even\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e09:30 – 11:30\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eTalk: “Foxa2 pioneers enteroendocrine lineage recruitment from\u003cbr\u003eintestinal stem cells” by \u003ca class=\"reference external\" href=\"https://www.helmholtz-munich.de/en/pi-3-20\"\u003eMichael Sterr\u003c/a\u003e\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-odd\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e10:00 – 11:30\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eOption A) Reproduce published figures\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-even\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eOption B) Discuss your own data/analysis\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003ctr class=\"row-odd\"\u003e\u003ctd\u003e\u003cp\u003e\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003e11:30 – 12:00\u003c/p\u003e\u003c/td\u003e\n\u003ctd\u003e\u003cp\u003eResults / Feedback\u003c/p\u003e\u003c/td\u003e\n\u003c/tr\u003e\n\u003c/tbody\u003e\n\u003c/table\u003e\n\u003c/div\u003e\n\u003c/section\u003e\n\u003cdiv class=\"toctree-wrapper compound\"\u003e\n\u003c/div\u003e\n\u003c/section\u003e\n\n    \u003cscript type=\"text/x-thebe-config\"\u003e\n    {\n        requestKernel: true,\n        binderOptions: {\n            repo: \"binder-examples/jupyter-stacks-datascience\",\n            ref: \"master\",\n        },\n        codeMirrorConfig: {\n            theme: \"abcdef\",\n            mode: \"python\"\n        },\n        kernelOptions: {\n            name: \"python3\",\n            path: \"./.\"\n        },\n        predefinedOutput: true\n    }\n    \u003c/script\u003e\n    \u003cscript\u003ekernelName = 'python3'\u003c/script\u003e\n\n                \u003c/article\u003e\n              \n\n              \n              \n              \n              \n                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