{"id":16270842,"url":"https://github.com/tjake/dockerfold","last_synced_at":"2025-04-08T15:28:02.787Z","repository":{"id":66849543,"uuid":"321134852","full_name":"tjake/DockerFold","owner":"tjake","description":"Run AlphaFold casp13 model in docker (On a Mac)","archived":false,"fork":false,"pushed_at":"2020-12-13T19:32:37.000Z","size":1,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-02-14T11:52:09.186Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Shell","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/tjake.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2020-12-13T18:42:36.000Z","updated_at":"2020-12-13T19:32:39.000Z","dependencies_parsed_at":"2023-02-21T05:00:57.448Z","dependency_job_id":null,"html_url":"https://github.com/tjake/DockerFold","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tjake%2FDockerFold","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tjake%2FDockerFold/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tjake%2FDockerFold/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tjake%2FDockerFold/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/tjake","download_url":"https://codeload.github.com/tjake/DockerFold/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247870098,"owners_count":21009774,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-10T18:11:46.283Z","updated_at":"2025-04-08T15:28:02.762Z","avatar_url":"https://github.com/tjake.png","language":"Shell","funding_links":[],"categories":[],"sub_categories":[],"readme":"## Running AlphaFold with Docker\n\n\n Setup of the [alphafold casp13](https://github.com/deepmind/deepmind-research/tree/master/alphafold_casp13) model is only for linux, this tool allows anyone with docker (mac,pc,etc) to run the model.\n\n\n### Installation:\n\n  * Install [Docker for Mac](https://hub.docker.com/editions/community/docker-ce-desktop-mac/)\n  \n  * Download [this code](https://github.com/tjake/DockerFold/archive/dockerfold.zip)\n\n     `curl -L https://github.com/tjake/DockerFold/archive/master.zip --output dockerfold.zip`\n     \n     `unzip dockerfold.zip`\n\n     `cd DockerFold-master`\n\n\n  * Download the model data **(45GB)**\n\n     `curl -L http://bit.ly/alphafold-casp13-data --output data.zip`\n\n  * Unzip data into same directory\n  \n     `unzip data.zip -d data`\n\n  * Run model and generate output (first run will build the docker image)\n  \n     `./run.sh -i data -t T1019s2 -o output_T1019s2`  \n\n     **This will take many hours to run!**","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftjake%2Fdockerfold","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ftjake%2Fdockerfold","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftjake%2Fdockerfold/lists"}