{"id":16499916,"url":"https://github.com/tlnagy/nagy_2023_swellmigration","last_synced_at":"2026-06-13T09:33:10.653Z","repository":{"id":216215229,"uuid":"712176219","full_name":"tlnagy/Nagy_2023_SwellMigration","owner":"tlnagy","description":"Code used to generate the figures for the \"Neutrophils Actively Swell to Potentiate Migration\" paper","archived":false,"fork":false,"pushed_at":"2025-06-04T18:37:36.000Z","size":46626,"stargazers_count":0,"open_issues_count":1,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-06-04T23:26:49.766Z","etag":null,"topics":["dataset","image-analysis-and-processing","julia","microscopy-data","reproducible-paper","reproducible-research"],"latest_commit_sha":null,"homepage":"http://tamasnagy.com/Nagy_2023_SwellMigration/","language":"Julia","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/tlnagy.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-10-31T00:17:39.000Z","updated_at":"2025-06-04T17:47:41.000Z","dependencies_parsed_at":"2024-01-12T01:35:34.600Z","dependency_job_id":"ab2e97b2-d1e0-44b0-92b5-22b2c43ba29f","html_url":"https://github.com/tlnagy/Nagy_2023_SwellMigration","commit_stats":null,"previous_names":["tlnagy/nagy_2023_swellmigration"],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/tlnagy/Nagy_2023_SwellMigration","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tlnagy%2FNagy_2023_SwellMigration","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tlnagy%2FNagy_2023_SwellMigration/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tlnagy%2FNagy_2023_SwellMigration/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tlnagy%2FNagy_2023_SwellMigration/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/tlnagy","download_url":"https://codeload.github.com/tlnagy/Nagy_2023_SwellMigration/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tlnagy%2FNagy_2023_SwellMigration/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34279898,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-13T02:00:06.617Z","response_time":62,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["dataset","image-analysis-and-processing","julia","microscopy-data","reproducible-paper","reproducible-research"],"created_at":"2024-10-11T14:54:55.807Z","updated_at":"2026-06-13T09:33:10.630Z","avatar_url":"https://github.com/tlnagy.png","language":"Julia","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Code for \"Neutrophils actively swell to potentiate rapid migration\" \n\n[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.11226815.svg)](https://doi.org/10.5281/zenodo.11226815)\n[![CI](https://github.com/tlnagy/Nagy_2023_SwellMigration/actions/workflows/CI.yml/badge.svg)](https://github.com/tlnagy/Nagy_2023_SwellMigration/actions/workflows/CI.yml)\n[![website](https://img.shields.io/badge/code_and_figures-blue)](https://tamasnagy.com/Nagy_2023_SwellMigration)\n\n\nThis is the code used to generate the figures in my paper:\n\n**Nagy, T.L.**, Strickland, E., and Weiner, O.D. (2023). Neutrophils actively swell to potentiate rapid migration. Elife. 10.7554/elife.90551.\n\nPlease cite the paper if any of this is useful to you. This code base\nautomatically generates and builds most of the figures and movies in the paper\nand generates a nice website that's viewable here: \n\nclick here \u003e\u003e\u003e [![website](https://img.shields.io/badge/code_and_figures-blue)](https://tamasnagy.com/Nagy_2023_SwellMigration)\n\nTo do this the code in this repository:\n\n1. Downloads the necessary data from\n   [DataDryad](https://datadryad.org/stash/dataset/doi:10.7272/Q6NS0S5N)\n2. Runs the analysis to generate the figures\n3. Builds the website\n\nSee the [Overview](https://tamasnagy.com/Nagy_2023_SwellMigration/#Overview) of\nthe website to see how to run the codebase locally.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftlnagy%2Fnagy_2023_swellmigration","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ftlnagy%2Fnagy_2023_swellmigration","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftlnagy%2Fnagy_2023_swellmigration/lists"}