{"id":15401231,"url":"https://github.com/tmcdonell/hfx","last_synced_at":"2025-04-05T10:21:35.196Z","repository":{"id":146157909,"uuid":"2171103","full_name":"tmcdonell/hfx","owner":"tmcdonell","description":"Accelerated cross-correlation based identification of protein sequences","archived":false,"fork":false,"pushed_at":"2012-07-17T04:07:34.000Z","size":24639,"stargazers_count":2,"open_issues_count":0,"forks_count":1,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-02-17T21:04:37.758Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"C++","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/tmcdonell.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2011-08-08T01:51:13.000Z","updated_at":"2021-12-19T07:12:45.000Z","dependencies_parsed_at":"2023-03-23T13:31:34.605Z","dependency_job_id":null,"html_url":"https://github.com/tmcdonell/hfx","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tmcdonell%2Fhfx","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tmcdonell%2Fhfx/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tmcdonell%2Fhfx/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tmcdonell%2Fhfx/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/tmcdonell","download_url":"https://codeload.github.com/tmcdonell/hfx/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247319836,"owners_count":20919661,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-01T15:56:58.393Z","updated_at":"2025-04-05T10:21:35.178Z","avatar_url":"https://github.com/tmcdonell.png","language":"C++","funding_links":[],"categories":[],"sub_categories":[],"readme":"HFX\n===\n\nA program for fast protein identification, written in Haskell and accelerated\nusing CUDA for NVIDIA GPUs. This is an implementation of the SEQUEST algorithm,\nusing cross-correlation based identification of protein sequences from tandem MS\nspectra.\n\n  * [1] J. K. Eng, B. Fischer, J. Grossmann, and M. J. MacCoss. \"A fast sequest\n        cross correlation algorithm.\" Journal of Proteome Research,\n        7(10):4598-4602, 2008.\n\n  * [2] J. K. Eng, A. L. McCormack, and I. John R. Yates. \"An approach to\n        correlate tandem mass spectral data of peptides with amino acid sequences\n        in a protein database.\" Journal of the American Society for Mass\n        Spectrometry, 5(11):976-989, November 1994.\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftmcdonell%2Fhfx","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ftmcdonell%2Fhfx","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftmcdonell%2Fhfx/lists"}