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toxpiR \u003cimg src=\"man/figures/logo-hex.png\" width=\"150\" align=\"right\" /\u003e\n\n\u003c!-- badges: start --\u003e\n  [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)\n  [![R-CMD-check](https://github.com/ToxPi/toxpiR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ToxPi/toxpiR/actions/workflows/R-CMD-check.yaml)\n  [![cran-version](https://www.r-pkg.org/badges/version-last-release/toxpiR?color=blue)](https://cran.r-project.org/web/packages/toxpiR/index.html)\n  [![downloads](https://cranlogs.r-pkg.org/badges/grand-total/toxpiR)](https://cranlogs.r-pkg.org/badges/grand-total/toxpiR)\n  [![codecov](https://codecov.io/gh/ToxPi/toxpiR/branch/main/graph/badge.svg?token=7yocvT0KzZ)](https://codecov.io/gh/ToxPi/toxpiR)\n\n\u003c!-- badges: end --\u003e\n\nR package for the Toxicological Priority Index (ToxPi) prioritization algorithm. \nPackage developed and maintained by the [Reif Lab](http://reif-lab.org). \n\n### Installation\n\nCurrent stable release (CRAN):\n\n```r\ninstall.packages(\"toxpiR\")\n```\n\nCurrent stable release (Build from GitHub):\n\n```r\nremotes::install_github(\"ToxPi/toxpiR\", \n                        dependencies = TRUE)\n                        \nNote: Users may need to ensure \"remotes\" package and packages\nrequiring \"BiocManager\" are installed before building package.\n\nif (!require(remotes)) install.packages(\"remotes\")\n\nif (!require(BiocManager, quietly = TRUE)) {\n  install.packages(\"BiocManager\")\n}\nBiocManager::install(c(\"S4Vectors\",\"BiocGenerics\"))\n\n```\n\nCurrent stable release (Build from GitHub with vignettes):\n\n```r\nremotes::install_github(\"ToxPi/toxpiR\",\n                        dependencies = TRUE, \n                        build_vignettes = TRUE)\n\nNote: Building packages with vignettes requires the package\n\"pandoc\" to be installed.\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftoxpi%2Ftoxpir","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ftoxpi%2Ftoxpir","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftoxpi%2Ftoxpir/lists"}