{"id":20081078,"url":"https://github.com/trangdata/tdapseudotime","last_synced_at":"2026-06-08T19:32:15.506Z","repository":{"id":95113037,"uuid":"298847690","full_name":"trangdata/tdapseudotime","owner":"trangdata","description":"R package for temporal phenotyping via topological data analysis and pseudo time","archived":false,"fork":false,"pushed_at":"2021-02-03T21:30:58.000Z","size":8542,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-03-02T13:27:53.573Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://trang1618.github.io/tdapseudotime","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/trangdata.png","metadata":{"files":{"readme":"readme.Rmd","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2020-09-26T15:50:20.000Z","updated_at":"2021-02-03T21:24:18.000Z","dependencies_parsed_at":"2023-05-26T18:15:34.248Z","dependency_job_id":null,"html_url":"https://github.com/trangdata/tdapseudotime","commit_stats":{"total_commits":31,"total_committers":1,"mean_commits":31.0,"dds":0.0,"last_synced_commit":"0bc3b13adb77eb51ca17155833b478024373afc3"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/trangdata/tdapseudotime","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/trangdata%2Ftdapseudotime","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/trangdata%2Ftdapseudotime/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/trangdata%2Ftdapseudotime/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/trangdata%2Ftdapseudotime/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/trangdata","download_url":"https://codeload.github.com/trangdata/tdapseudotime/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/trangdata%2Ftdapseudotime/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34078019,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-08T02:00:07.615Z","response_time":111,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-13T15:33:21.365Z","updated_at":"2026-06-08T19:32:15.487Z","avatar_url":"https://github.com/trangdata.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"---\ntitle: \"Temporal phenotyping via topological data analysis\"\noutput: rmarkdown::github_document\n---\n\nThe {tdapseudotime} :package: contains functions to implement the temporal phenotyping via topological data analysis of EHR COVID-19 data from the 4CE consortium.\n\n```{r, include = FALSE}\nknitr::opts_chunk$set(\n  fig.path = \"man/figures/\"\n)\n```\n\nYou can install the development version of tdapseudotime from GitHub with remotes:\n```{r, eval=FALSE}\n# install.packages('remotes') # uncomment to install devtools\nremotes::install_github('trang1618/tdapseudotime')\n```\n\nFor detailed instruction on how to deploy the TDA algorithm on your site data,\nplease visit the vignettes -- [train](https://trang1618.github.io/tdapseudotime/articles/train.html) or [test](https://trang1618.github.io/tdapseudotime/articles/test.html) depending on the site.\n\nPlease [open an issue](https://github.com/trang1618/tdapseudotime/issues/new) for questions related to **tdapseudotime** usage, bug reports or general inquiries.\n\nThank you very much for your support!\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftrangdata%2Ftdapseudotime","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ftrangdata%2Ftdapseudotime","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftrangdata%2Ftdapseudotime/lists"}