{"id":16274250,"url":"https://github.com/trinker/annotated_bibliography","last_synced_at":"2026-02-14T23:34:45.826Z","repository":{"id":17805423,"uuid":"20692833","full_name":"trinker/Annotated_Bibliography","owner":"trinker","description":null,"archived":false,"fork":false,"pushed_at":"2014-06-11T03:24:56.000Z","size":304,"stargazers_count":2,"open_issues_count":0,"forks_count":2,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-10-07T17:51:44.519Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"TeX","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/trinker.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2014-06-10T16:30:17.000Z","updated_at":"2014-08-07T09:26:36.000Z","dependencies_parsed_at":"2022-09-02T12:24:11.874Z","dependency_job_id":null,"html_url":"https://github.com/trinker/Annotated_Bibliography","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/trinker/Annotated_Bibliography","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/trinker%2FAnnotated_Bibliography","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/trinker%2FAnnotated_Bibliography/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/trinker%2FAnnotated_Bibliography/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/trinker%2FAnnotated_Bibliography/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/trinker","download_url":"https://codeload.github.com/trinker/Annotated_Bibliography/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/trinker%2FAnnotated_Bibliography/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29460800,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-14T22:42:09.113Z","status":"ssl_error","status_checked_at":"2026-02-14T22:42:05.053Z","response_time":53,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-10T18:27:58.478Z","updated_at":"2026-02-14T23:34:45.809Z","avatar_url":"https://github.com/trinker.png","language":"TeX","funding_links":[],"categories":[],"sub_categories":[],"readme":"Annotated Bibliography\n========================================================\n\nThis is an repo demonstrating the use of a data base to build reports.  Here I store information around various articles in [ann_bib.xlsx](ann_bib.xlsx).  This approach uses R + knitr to create reports from a data base.  The  process is fully automated in the .Rnw file ([Annotated_Bibliography.Rnw](Annotated_Bibliography.Rnw)) as it reads in the information from [ann_bib.xlsx](ann_bib.xlsx) and the bibligraphy, [refs.bib](refs.bib).  Other possible uses of a data base to report aproach include:\n\n- CV/Resume generation\n- ...   \n\nThe [converting.R](converting.R) demonstrates how to use Pandoc to convert between file types.  \n\n## Output Files\n\n- [Annotated_Bibliography.pdf](Annotated_Bibliography.pdf)    \n- [Annotated_Bibliography.md](Annotated_Bibliography.md)\n- [Annotated_Bibliography_TOC.md](Annotated_Bibliography_TOC.md)\n- [Annotated_Bibliography.html](Annotated_Bibliography.html)   \n\n## Code to Generate Report\n\n```r\nlibrary(xlsx)\n\ndat \u003c- read.xlsx(file=\"ann_bib.xlsx\", sheetIndex=1, colIndex=1:5)\n\ndat \u003c- dat[rowSums(t(apply(dat, 1, is.na))) == 0, ]\n\ndat[, 1:4] \u003c- lapply(1:4, function(i, type=c(rep(\"as.character\", 4))) {\n    FUN \u003c- match.fun(type[i])\n    x \u003c- FUN(dat[, i])\n    x\n})\n\nw \u003c- \"\\\\section{\\\\textcite{%s}}\\n\\n\n\\\\negpar{\\\\textcolor{darkblue}{\\\\fullcite{%s}}}\\n\\n\\n\n\\\\regpar\\n\\n\\n\n\\\\subsection{Summary of Research Questions \\\\\u0026 Results/Conclusion} %% A short summary of the research question and results/conclusions (75-100 words)\\n%s\\n\n\\\\subsection{Evaluation of Methods \\\\\u0026 Conclusions} %% An evaluation of methods and conclusions (25-75) words.\\n%s\\n\n\\\\subsection{Significance to Topic} %% The contribution to your topic (why is this paper important?)\\n%s\\n\n%%==========================================================================\\n\\n\"\n\ncat(sprintf(w, dat[, 1], dat[, 1], dat[, 2], dat[, 3], dat[, 4]))\n```\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftrinker%2Fannotated_bibliography","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ftrinker%2Fannotated_bibliography","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftrinker%2Fannotated_bibliography/lists"}