{"id":16273983,"url":"https://github.com/trinker/ggtree-1","last_synced_at":"2026-06-23T04:31:12.546Z","repository":{"id":146663594,"uuid":"41859468","full_name":"trinker/ggtree-1","owner":"trinker","description":"This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ggtree.html Contributions: https://github.com/GuangchuangYu/ggtree. 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It based on grammar of graphics and takes all the good parts of `ggplot2`. \n\n`ggtree` is designed for not only viewing phylogenetic tree but also displaying annotation data in the tree. \n\n## Authors ##\n\nGuangchuang Yu and Tommy Tsan-Yuk Lam, School of Public Health, The University of Hong Kong.\n\n## Citation ##\n\nPlease cite the following article when using `ggtree`:\n\n```\nG Yu, D Smith, H Zhu, Y Guan, TTY Lam,\nggtree: an R package for visualization and annotation of phylogenetic tree \n\t\twith different types of meta-data.\nMethods in Ecology and Evolution, submitted\n```\n\n## License ##\n\nAll source code is copyright, under the Artistic-2.0 License.\nFor more information on Artistic-2.0 License see [http://opensource.org/licenses/Artistic-2.0](http://opensource.org/licenses/Artistic-2.0)\n\n## Installation ##\n\nTo install:\n * the latest released version: `biocLite(\"ggtree\")`\n * the latest development version: `install_github(\"GuangchuangYu/ggtree\")`\n\n## Documentation ##\n\n+ [viewing and annotating phylogenetic tree with ggtree](http://ygc.name/2014/12/21/ggtree/)\n+ [updating a tree view using %\u003c% operator](http://ygc.name/2015/02/10/ggtree-updating-a-tree-view/)\n+ [an example of drawing beast tree using ggtree](http://ygc.name/2015/04/01/an-example-of-drawing-beast-tree-using-ggtree/)\n+ [flip and rotate branches in ggtree](http://ygc.name/2015/07/01/flip-and-rotate-branches-in-ggtree/)\n+ [ggtree with funny fonts](http://ygc.name/2015/06/12/ggtree-with-funny-fonts/)\n+ [annotate phylogenetic tree with local images](http://ygc.name/2015/08/01/ggtree-annotate-phylogenetic-tree-with-local-images/)\n\nTo view the vignette of `ggtree` installed in your system, start `R` and enter:\n```r\nvignette(\"ggtree\", package = \"ggtree\")\n```\n\n## Bugs/Feature requests ##\n\n - If you have any, [let me know](https://github.com/GuangchuangYu/ggtree/issues). Thx!\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftrinker%2Fggtree-1","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ftrinker%2Fggtree-1","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftrinker%2Fggtree-1/lists"}