{"id":40969705,"url":"https://github.com/tskit-dev/tsconvert","last_synced_at":"2026-01-22T06:40:55.748Z","repository":{"id":48500780,"uuid":"166240816","full_name":"tskit-dev/tsconvert","owner":"tskit-dev","description":"Utilities for converting tree sequences to and from other formats","archived":false,"fork":false,"pushed_at":"2025-03-19T13:54:34.000Z","size":68,"stargazers_count":7,"open_issues_count":21,"forks_count":6,"subscribers_count":5,"default_branch":"main","last_synced_at":"2025-03-19T14:25:54.119Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/tskit-dev.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-01-17T14:39:06.000Z","updated_at":"2025-03-19T13:54:38.000Z","dependencies_parsed_at":"2024-12-11T12:27:51.500Z","dependency_job_id":"7e405b9e-a05b-45eb-8cc8-d376fd471d11","html_url":"https://github.com/tskit-dev/tsconvert","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/tskit-dev/tsconvert","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tskit-dev%2Ftsconvert","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tskit-dev%2Ftsconvert/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tskit-dev%2Ftsconvert/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tskit-dev%2Ftsconvert/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/tskit-dev","download_url":"https://codeload.github.com/tskit-dev/tsconvert/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tskit-dev%2Ftsconvert/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28657088,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-22T01:17:37.254Z","status":"online","status_checked_at":"2026-01-22T02:00:07.137Z","response_time":144,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2026-01-22T06:40:55.685Z","updated_at":"2026-01-22T06:40:55.743Z","avatar_url":"https://github.com/tskit-dev.png","language":"Python","readme":"# tsconvert\n\nUtilities for converting [tskit](https://github.com/tskit-dev/tskit) tree sequences to\nand from other formats. \n\n`tsconvert` is in early development\n\n## Roadmap for v0.1\n\n - Where conversion methods are widely used and do not require any dependencies,\n   they will be implemented in `tskit`, for example writing VCF. `tsconvert` can then call\n   the `tskit` method so that it has a complete list. Methods that require dependancies\n   will be implemented here to avoid dependency bloat in `tskit`.\n\n\n - Provide either `to_`, `from_` (or both as appropriate) methods \n   for the following formats: \n - [ ] vcf\n - [ ] ms\n - [ ] argon\n - [ ] newick\n - [ ] newick + csv/tsv metadata\n - [ ] nexus\n - [ ] sgkit\n \n\n - Where a format doesn't provide a full tree sequence it will\n   have a `parse_` method: \n - [ ] plink (pedigree)\n\n \n - Allow these methods to be used from the CLI, including streams.\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftskit-dev%2Ftsconvert","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Ftskit-dev%2Ftsconvert","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Ftskit-dev%2Ftsconvert/lists"}