{"id":26766061,"url":"https://github.com/ucl/admur","last_synced_at":"2025-06-12T08:05:39.435Z","repository":{"id":56935159,"uuid":"278099321","full_name":"UCL/ADMUR","owner":"UCL","description":null,"archived":false,"fork":false,"pushed_at":"2023-09-11T14:32:34.000Z","size":31125,"stargazers_count":11,"open_issues_count":1,"forks_count":1,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-06-12T08:05:36.117Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/UCL.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-07-08T13:38:39.000Z","updated_at":"2024-06-21T17:38:42.000Z","dependencies_parsed_at":"2025-04-15T12:50:55.620Z","dependency_job_id":null,"html_url":"https://github.com/UCL/ADMUR","commit_stats":null,"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/UCL/ADMUR","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UCL%2FADMUR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UCL%2FADMUR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UCL%2FADMUR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UCL%2FADMUR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/UCL","download_url":"https://codeload.github.com/UCL/ADMUR/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UCL%2FADMUR/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":259426925,"owners_count":22855550,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-03-28T20:18:58.906Z","updated_at":"2025-06-12T08:05:39.404Z","avatar_url":"https://github.com/UCL.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"\u003ca href=\"https://github.com/UCL\"\u003e\u003cimg src=\"tools/logos/logo_UCL.png\" alt=\"UCL Research Software Development\" height=\"70\"/\u003e\u003c/a\u003e\n\u003ca href=\"https://www.ucl.ac.uk/biosciences/gee/molecular-and-cultural-evolution-lab\"\u003e\u003cimg src=\"tools/logos/logo_MACElab.png\" alt=\"UCL Research Software Development\" height=\"70\"/\u003e\u003c/a\u003e\n\u003ca href=\"https://www.shh.mpg.de\"\u003e\u003cimg src=\"tools/logos/logo_MPI.png\" alt=\"Max Planck Institute for the Science of Human History\" height=\"70\"/\u003e\u003c/a\u003e\n\u003ca href=\"https://www.shh.mpg.de/1143811/pan-ev\"\u003e\u003cimg src=\"tools/logos/logo_PanEv.png\" alt=\"Pan African Evolution ResearchGroup\" height=\"70\"/\u003e\u003c/a\u003e\n\n[![Build Status](https://app.travis-ci.com/AdrianTimpson/ADMUR.svg?branch=master)](https://app.travis-ci.com/AdrianTimpson/ADMUR)\n\n# ADMUR\n## Ancient Demographic Modelling Using Radiocarbon\n\nStatistical tools to directly model underlying population dynamics using date datasets (radiocarbon and other). \n\n### Population modelling\n\nVarious model structures can be compared in a robust formal model comparison framework. Continuous Piecewise Linear (CPL) models are infinitely flexible, and can recover complex population dynamics if enough data is available. Other simpler models include: Uniform, Exponential, Gaussian, Cauchy, Sinusoidal, Logistic and Power law. Taphonomic loss included optionally as a power function. \n\n### Bayesian Parameter estimation\n\nPosterior parameter estimates of population models, using model likelihoods and a weak uniform prior. \n\n### SPDs and simulation based testing\n\nPackage also calibrates 14C samples, generates Summed Probability Distributions (SPD), and performs SPD simulation analysis to generate a Goodness-of-fit test for the best selected model. \nContinuous Piecewise Linear (CPL) models that are flexible to estimate any complex population dynamics\n\n## Installation\nInstall from CRAN, then load\n``` r\ninstall.packages('ADMUR')\nlibrary('ADMUR')\n```\n\n## Guide\n\nRefer to the vignette 'guide' for detailed support and examples.\n\n``` r\nvignette('guide', package = 'ADMUR')\n```\n\n## Contact\n\nPlease contact a.timpson@ucl.ac.uk  in the first instance to make suggestions, report bugs or request help.\n\n## References\n\nThis package accompanies the following paper:\n\nTimpson A., Barberena R., Thomas M. G., Mendez C., Manning K. 2020. \"Directly modelling population dynamics in the South American Arid Diagonal using 14C dates\",Philosophical Transactions B. \u003chttps://royalsocietypublishing.org/doi/10.1098/rstb.2019.0723\u003e.\n\nCitations available as follows:\n``` r\ncitation(package='ADMUR')\n```\n\n---\n\nADMUR was written in collaboration with:\n- University College London\n    - Department of Genetics, Evolution and Environment\n    - Molecular and Cultural Evolution Laboratory\n    - UCL Research Software Development\n- Max Planck Institute for the Science of Human History\n    - Department of Archaeology\n    - Pan African Evolution ResearchGroup\n\nSpecial thanks to Yoan Diekmann for his influential inferential input.\n\nAlso thanks to the following who have reported bugs, requested additional functionality, offered constructive criticism, or provided other advice:\n- Gregor Seyer \n- Uwe Ligges\n- Prof Brian Ripley\n- Enrico Crema\n- Ricardo Fernandes\n- Mark G. Thomas\n---","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fucl%2Fadmur","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fucl%2Fadmur","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fucl%2Fadmur/lists"}