{"id":26766317,"url":"https://github.com/ucl/membranedivergence","last_synced_at":"2025-03-28T20:19:47.896Z","repository":{"id":22296291,"uuid":"25631070","full_name":"UCL/membranedivergence","owner":"UCL","description":null,"archived":false,"fork":false,"pushed_at":"2014-10-23T10:26:28.000Z","size":928,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":3,"default_branch":"master","last_synced_at":"2024-04-16T19:02:46.947Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"CSS","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/UCL.png","metadata":{"files":{"readme":"README","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2014-10-23T10:13:48.000Z","updated_at":"2024-04-16T19:02:46.948Z","dependencies_parsed_at":"2022-08-21T01:00:32.326Z","dependency_job_id":null,"html_url":"https://github.com/UCL/membranedivergence","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UCL%2Fmembranedivergence","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UCL%2Fmembranedivergence/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UCL%2Fmembranedivergence/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UCL%2Fmembranedivergence/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/UCL","download_url":"https://codeload.github.com/UCL/membranedivergence/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":246093164,"owners_count":20722403,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-03-28T20:19:47.335Z","updated_at":"2025-03-28T20:19:47.856Z","avatar_url":"https://github.com/UCL.png","language":"CSS","funding_links":[],"categories":[],"sub_categories":[],"readme":"This document explains how to use the Membrane Bioenergetics model of Sojo, Lane \u0026 Pomiankowski, as published on \"A Bioenergetic Basis for Membrane Divergence in Archaea and Bacteria\", PLoS Biology (2014).\n\nThe code was written by Victor Sojo (v.sojo.11@ucl.ac.uk), designed in collaboration with Nick Lane (n.lane@ucl.ac.uk), and analysed by all three authors.\n\nTO DOWNLOAD: click on \"Download ZIP\" from the GitHub options on the right.\n\nTO RUN: just open \"index.html\" on any web browser (Firefox, Chrome, Safari, Opera... or Internet Explorer if you truly must...).\n\nSelect your parameters and click Start, then Iterate.\n\nYou can switch on a plotting function by selecting the corresponding checkbox at the end of the parameters tab. You can also choose to produce output in the form of a table to be analysed later. Both of these options make the code run much more slowly, so if you only care about final values, leave the plotting off, and the skip value high (1,000,000).\n\nWe are thankful to James Letts at the MRC in Cambridge for suggesting corrections.\n\nPlease do contact Victor at v.sojo.11@ucl.ac.uk if you have any suggestions or questions regarding the code or the paper.\n\n(c) University College London - CoMPLEX / GEE - 2014 (c)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fucl%2Fmembranedivergence","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fucl%2Fmembranedivergence","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fucl%2Fmembranedivergence/lists"}