{"id":32542874,"url":"https://github.com/uclouvain-cbio/depmap","last_synced_at":"2025-10-28T16:54:12.443Z","repository":{"id":40560151,"uuid":"169714289","full_name":"UCLouvain-CBIO/depmap","owner":"UCLouvain-CBIO","description":"Cancer Dependency Map package","archived":false,"fork":false,"pushed_at":"2024-08-16T08:35:24.000Z","size":1586087,"stargazers_count":24,"open_issues_count":3,"forks_count":8,"subscribers_count":3,"default_branch":"master","last_synced_at":"2024-08-16T16:47:56.096Z","etag":null,"topics":["bioconductor","bioconductor-package","depmap"],"latest_commit_sha":null,"homepage":"https://uclouvain-cbio.github.io/depmap/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/UCLouvain-CBIO.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null}},"created_at":"2019-02-08T09:54:18.000Z","updated_at":"2024-08-16T08:16:18.000Z","dependencies_parsed_at":"2024-03-21T06:34:21.772Z","dependency_job_id":null,"html_url":"https://github.com/UCLouvain-CBIO/depmap","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/UCLouvain-CBIO/depmap","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UCLouvain-CBIO%2Fdepmap","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UCLouvain-CBIO%2Fdepmap/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UCLouvain-CBIO%2Fdepmap/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UCLouvain-CBIO%2Fdepmap/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/UCLouvain-CBIO","download_url":"https://codeload.github.com/UCLouvain-CBIO/depmap/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UCLouvain-CBIO%2Fdepmap/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":281476676,"owners_count":26508145,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-10-28T02:00:06.022Z","response_time":60,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioconductor","bioconductor-package","depmap"],"created_at":"2025-10-28T16:54:11.526Z","updated_at":"2025-10-28T16:54:12.430Z","avatar_url":"https://github.com/UCLouvain-CBIO.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# The `depmap` package\n\n## Introduction\n\n[depmap](https://github.com/UCLouvain-CBIO/depmap/) is an\nR/Bioconductor data package that disseminates cancer dependency omics\ndatasets from the [Broad Institute\ndepmap](https://depmap.org/portal/download/) project.\n\n\u003c!-- As the DepMap --\u003e\n\u003c!-- screening efforts continue, the --\u003e\n\u003c!-- [depmap](https://github.com/UCLouvain-CBIO/depmap/) package will --\u003e\n\u003c!-- updated on a quarterly basis, in line with the Broad Institute --\u003e\n\u003c!-- [depmap](https://depmap.org/portal/download/) cancer dependency --\u003e\n\u003c!-- mapping initiative. --\u003e\n\n- Portal: https://depmap.org/portal/\n- Selected publications: see https://depmap.org/portal/depmap/\n\nThe [github page](https://github.com/UCLouvain-CBIO/depmap) page is\nfor active development, issue tracking and forking/pulling purposes.\n\nThe [depmap](https://github.com/UCLouvain-CBIO/depmap/) package aims\nto provide a reproducible research framework to cancer dependency data\ndescribed by [Tsherniak, Aviad, et al. \"Defining a cancer dependency\nmap.\" Cell 170.3 (2017):\n564-576.](https://www.ncbi.nlm.nih.gov/pubmed/28753430).\n\nTo get an overview of the package, see the depmap vignette.\n\n## Installation\n\nTo install [depmap](https://github.com/UCLouvain-CBIO/depmap/), the\n[BiocManager](https://cran.r-project.org/web/packages/BiocManager/index.html)\nBioconductor Project Package Manager is required. If\n[BiocManager](https://cran.r-project.org/web/packages/BiocManager/index.html)\nis not already installed, it will need to be done so beforehand with\n(within R) `install.packages(\"BiocManager\")`. Once it is installed,\n`depmap` can be installed from Biocondctor:\n\n```r\ninstall.packages(\"BiocManager\")\nBiocManager::install(\"depmap\")\n```\n\nTo install the version from GitHub, use\n\n```r\ninstall.packages(\"BiocManager\")\nBiocManager::install(\"UCLouvain-CBIO/depmap\")\n```\n\n## Questions\n\nFeel also free to open a GitHub\n[issue](https://github.com/UCLouvain-CBIO/depmap/issues), in\nparticular for bug reports.\n\nQuestions can also be posted on the [Bioconductor\nforum](https://support.bioconductor.org/).\n\n## Contributing\n\nContributions to the package are more than welcome. If you want to\ncontribute to this package, you should follow the same conventions as\nthe rest of the functions. Please do get in touch (preferable opening\na [github issue](https://github.com/UCLouvain-CBIO/depmap/issues/)) to\ndiscuss any suggestions.\n\nPlease note that this project is released with a [Contributor Code of\nConduct](https://github.com/UCLouvain-CBIO/depmap/blob/master/CONDUCT.md).\nBy participating in this project you agree to abide by its terms.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fuclouvain-cbio%2Fdepmap","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fuclouvain-cbio%2Fdepmap","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fuclouvain-cbio%2Fdepmap/lists"}