{"id":31031796,"url":"https://github.com/unipept/unipept","last_synced_at":"2026-01-21T18:01:47.216Z","repository":{"id":17682788,"uuid":"20488659","full_name":"unipept/unipept","owner":"unipept","description":"🌐 Unipept frontend for metaproteomics data analysis","archived":false,"fork":false,"pushed_at":"2025-08-18T11:28:03.000Z","size":129159,"stargazers_count":24,"open_issues_count":22,"forks_count":4,"subscribers_count":5,"default_branch":"develop","last_synced_at":"2025-08-18T13:15:52.513Z","etag":null,"topics":["data-analysis","data-visualization","metaproteomics","unipept","uniprot"],"latest_commit_sha":null,"homepage":"https://unipept.ugent.be","language":"Vue","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/unipept.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2014-06-04T15:17:25.000Z","updated_at":"2025-08-18T11:17:54.000Z","dependencies_parsed_at":"2023-09-23T15:08:59.687Z","dependency_job_id":"dec9bb88-7c40-4f8a-824a-31d0847e5e5d","html_url":"https://github.com/unipept/unipept","commit_stats":{"total_commits":4949,"total_committers":20,"mean_commits":247.45,"dds":"0.43503738128914937","last_synced_commit":"44940cf1677e7051b8a616a88c808c79e26f85cf"},"previous_names":[],"tags_count":112,"template":false,"template_full_name":null,"purl":"pkg:github/unipept/unipept","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/unipept%2Funipept","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/unipept%2Funipept/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/unipept%2Funipept/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/unipept%2Funipept/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/unipept","download_url":"https://codeload.github.com/unipept/unipept/tar.gz/refs/heads/develop","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/unipept%2Funipept/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":275047954,"owners_count":25396337,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-13T02:00:10.085Z","response_time":70,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["data-analysis","data-visualization","metaproteomics","unipept","uniprot"],"created_at":"2025-09-14T00:48:26.281Z","updated_at":"2026-01-21T18:01:47.209Z","avatar_url":"https://github.com/unipept.png","language":"Vue","readme":"# Unipept\n\nThe [Unipept web application](http://unipept.ugent.be) supports biodiversity and functional analysis of large and complex metaproteome samples and the analysis of peptidomes.\n\nThe 6.0 release of Unipept brings support for non-tryptic peptides and the novel Peptonizer analysis pipeline to the tool.\n\nAn [API](https://unipept.ugent.be/apidocs) and [command line tool](http://github.com/unipept/unipept-cli) are available\nfor integration in other programs.\n\n## Contributing\n\nFound a bug or have an idea for an awesome new feature?\nFile an issue using the github [issue tracker](https://github.com/unipept/unipept/issues) or drop us a line at [unipept@ugent.be](mailto:unipept@ugent.be).\n\nIf you're willing to get your hands dirty, you might of course also send us a pull request!\n\n## Installation\n\nThis repository contains the source code for the Unipept web application.\n\nTo run this application locally, you need to have **Node.js** and **Yarn** installed.\n\n1.  Clone the repository:\n    ```bash\n    git clone https://github.com/unipept/unipept.git\n    cd unipept\n    ```\n\n2.  Install dependencies:\n    ```bash\n    yarn install\n    ```\n\n3.  Start the development server:\n    ```bash\n    yarn dev\n    ```\n\nThe application will be available at `http://localhost:3000`.\n\n### Custom Unipept Instance\n\nThis repository only contains the code for the web application of Unipept. To run a fully functional custom version of Unipept (with your own data), you also need to set up:\n\n*   The **Unipept Database**\n*   The **Unipept API**\n\nWe have detailed guides on how to set up all of these components on our Wiki:\n[https://github.com/unipept/unipept/wiki](https://github.com/unipept/unipept/wiki)\n\n## Who made this app?\n\nUnipept is a research project of the computational biology group at Ghent University. If you use this application, please cite:\n\n- Vande Moortele et al. (2025) J. Proteome Res. [doi.org:10.1021/acs.jproteome.4c00848](https://doi.org/10.1021/acs.jproteome.4c00848)\n- Verschaffelt et al. (2023) J. Proteome Res. [doi:10.1021/acs.jproteome.3c00091](doi.org/10.1021/acs.jproteome.3c00091)\n- Verschaffelt et al. (2021) J. Proteome Res. [doi:10.1021/acs.jproteome.0c00855](doi.org/10.1021/acs.jproteome.0c00855)\n- Verschaffelt et al. (2020) Bioinformatics [doi:10.1093/bioinformatics/btaa553](doi.org/10.1093/bioinformatics/btaa553)\n- Gurdeep Singh et al. (2019) J. Proteome Res. [doi:10.1021/acs.jproteome.8b00716](https://doi.org/10.1021/acs.jproteome.8b00716)\n- Mesuere et al. (2018) J. Proteomics [doi:10.1016/j.jprot.2017.05.022](https://doi.org/10.1016/j.jprot.2017.05.022)\n- Mesuere et al. (2016) Proteomics [doi:10.1002/pmic.201600023](https://doi.org/10.1002/pmic.201600023)\n- Mesuere et al. (2016) Bioinformatics [doi:10.1093/bioinformatics/btw039](https://doi.org/10.1093/bioinformatics/btw039)\n- Mesuere et al. (2015) Proteomics [doi:10.1002/pmic.201400361](https://doi.org/10.1002/pmic.201400361)\n- Mesuere et al. (2012) J. Proteome Res. [doi:10.1021/pr300576s](https://doi.org/10.1021/pr300576s)\n\nCurrent team:\n\n- Bart Mesuere ([@bmesuere](https://github.com/bmesuere)): Group leader and PhD supervisor, Unipept founder\n- Pieter Verschaffelt ([@pverscha](https://github.com/pverscha)): Postdoc and lead developer\n- Tibo Vande Moortele ([@tibvdm](https://github.com/tibvdm)): PhD student\n- Simon Van de Vyver ([@SimonVandeVyver](https://github.com/SimonVandeVyver)): PhD student\n- Ben-Björn Binke ([@benbnk](https://github.com/benbnk)): PhD student\n- Peter Dawyndt ([@pdawyndt](https://github.com/pdawyndt)): Group leader and PhD supervisor\n\nOther contributions from:\n\n- Felix Van der Jeugt ([@ninewise](https://github.com/ninewise)): Master's student 2014 - 2016 and PhD student 2016 - 2022\n- Robbert Gurdeep Singh ([@beardhatcode](https://github.com/beardhatcode)): Developer 2017-2018\n- Tom Naessens ([@silox](https://github.com/silox)): Master's student 2014-2015\n- Toon Willems ([@nudded](https://github.com/nudded)): Master's student 2013-2014\n- Ewan Higgs ([@ehiggs](https://github.com/ehiggs)): Ghent University HPC team\n- Peter Vandamme: PhD co-supervisor of Bart\n- Bart Devreese: PhD co-supervisor of Bart\n\nFor code contributions, the [contributors graph](https://github.com/unipept/unipept/graphs/contributors) is the place to be.\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Funipept%2Funipept","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Funipept%2Funipept","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Funipept%2Funipept/lists"}