{"id":17255210,"url":"https://github.com/unixjunkie/durandal_qcp","last_synced_at":"2026-07-08T23:31:05.261Z","repository":{"id":144782343,"uuid":"94488000","full_name":"UnixJunkie/durandal_qcp","owner":"UnixJunkie","description":"Durandal exact clustering for protein decoys using QCP RMSD","archived":false,"fork":false,"pushed_at":"2017-06-16T00:01:03.000Z","size":291,"stargazers_count":3,"open_issues_count":1,"forks_count":1,"subscribers_count":1,"default_branch":"master","last_synced_at":"2026-06-18T11:39:32.821Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"C++","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/UnixJunkie.png","metadata":{"files":{"readme":"README","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2017-06-16T00:00:05.000Z","updated_at":"2024-08-20T08:29:16.000Z","dependencies_parsed_at":null,"dependency_job_id":"ac9376b6-fbdc-4509-8b4f-ab66c4b78e69","html_url":"https://github.com/UnixJunkie/durandal_qcp","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/UnixJunkie/durandal_qcp","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UnixJunkie%2Fdurandal_qcp","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UnixJunkie%2Fdurandal_qcp/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UnixJunkie%2Fdurandal_qcp/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UnixJunkie%2Fdurandal_qcp/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/UnixJunkie","download_url":"https://codeload.github.com/UnixJunkie/durandal_qcp/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UnixJunkie%2Fdurandal_qcp/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":35281838,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-07-08T02:00:06.796Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-15T07:10:57.282Z","updated_at":"2026-07-08T23:31:05.232Z","avatar_url":"https://github.com/UnixJunkie.png","language":"C++","funding_links":[],"categories":[],"sub_categories":[],"readme":"The correspondence used to compute CARMSD for a pair of proteins is 1 to 1.\nIf two proteins A and B are to be optimally superposed, both PDB files\n(A.pdb and B.pdb) must have the same numbers of alpha carbons.\nThe first alpha carbon in A.pdb will be matched to the first alpha carbon in\nB.pdb, and so on.\n\nClustering up to 20,000 PDB files should work on most machines.\nWorkstations with a lot of memory will be able to cluster even more files.\n\nExamples:\n---------\n\n* to perform exact clustering using a fixed cutoff value of 3.0 Angstroms:\n\ndurandal -i [file_containing_one_PDB_filename_per_line] -d 3.0 -o out -s -v\n\n* there is also another tool included, to compute CARMSD of many files\n  versus a reference one (the first in the list is considered the\n  reference):\n\nranker [file_containing_one_PDB_filename_per_line]\n\nIf you want to know more about how the software is working, you can have a look\nat http://bioinformatics.oxfordjournals.org/content/27/7/939\n\nDon't hesitate to ask if you encounter any problem while using the software.\n\nBest regards,\nFrancois Berenger.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Funixjunkie%2Fdurandal_qcp","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Funixjunkie%2Fdurandal_qcp","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Funixjunkie%2Fdurandal_qcp/lists"}