{"id":19644844,"url":"https://github.com/uscbiostats/pruner","last_synced_at":"2026-06-13T17:31:03.869Z","repository":{"id":93430359,"uuid":"195113360","full_name":"USCbiostats/pruner","owner":"USCbiostats","description":"pruner: Implementing the Felsenstein's Tree Pruning algorithm","archived":false,"fork":false,"pushed_at":"2020-07-08T23:54:59.000Z","size":1075,"stargazers_count":1,"open_issues_count":1,"forks_count":3,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-01-09T20:42:33.449Z","etag":null,"topics":["cpp","cpp11","header-only","phylogenetic-trees","phylogenetics","pruning","tree"],"latest_commit_sha":null,"homepage":"https://uscbiostats.github.io/pruner","language":"C++","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/USCbiostats.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-07-03T19:13:29.000Z","updated_at":"2020-07-08T23:53:47.000Z","dependencies_parsed_at":"2023-03-10T16:31:05.983Z","dependency_job_id":null,"html_url":"https://github.com/USCbiostats/pruner","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/USCbiostats%2Fpruner","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/USCbiostats%2Fpruner/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/USCbiostats%2Fpruner/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/USCbiostats%2Fpruner/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/USCbiostats","download_url":"https://codeload.github.com/USCbiostats/pruner/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":240952927,"owners_count":19884019,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["cpp","cpp11","header-only","phylogenetic-trees","phylogenetics","pruning","tree"],"created_at":"2024-11-11T14:30:15.382Z","updated_at":"2026-06-13T17:30:58.832Z","avatar_url":"https://github.com/USCbiostats.png","language":"C++","funding_links":[],"categories":[],"sub_categories":[],"readme":"[![Build Status](https://travis-ci.org/USCbiostats/pruner.svg?branch=master)](https://travis-ci.org/USCbiostats/pruner)\n\n# pruner: Implementing the Felsenstein's Tree Pruning algorithm\n\nThis C++ template library provides classes to implement Felsenstein tree-pruning\nalgorithm for efficiently computing likelihood functions on phylogenies.\n\nThe library reads in a tree object in the form of `std::vector\u003c unsigned int \u003e`\nspecifying the source and target of each dyad (edge) and allows the user to \nstore arbitrary arguments using memory pointers, and `std::function` to be\ncalled with those arbitrary arguments and tree structure data.\n\nTrees are stored as two lists: each nodes' offspring, and each nodes' parents,\nwhich can be accessed at any point using `TreeIterator` class that implements\ntree traversals (pre and post order for pruning).\n\n## Contributing\n\nWe welcome contributions to `pruner`. Whether it is reporting a bug,\nstarting a discussion by asking a question, or proposing/requesting a\nnew feature, please go by creating a new issue\n[here](https://github.com/USCbiostats/pruner/issues) so that we can talk\nabout it.\n\nPlease note that this project is released with a\n[Contributor Code of Conduct](https://github.com/USCbiostats/pruner/blob/master/CODE_OF_CONDUCT.md). By participating in this project you agree\nto abide by its terms.\n\n## Funding\n\nSupported by National Cancer Institute Grant \\#1P01CA196596.","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fuscbiostats%2Fpruner","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fuscbiostats%2Fpruner","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fuscbiostats%2Fpruner/lists"}