{"id":19215897,"url":"https://github.com/vanvalenlab/cloud-notebook-runner","last_synced_at":"2025-12-31T14:25:24.297Z","repository":{"id":96660573,"uuid":"269452374","full_name":"vanvalenlab/cloud-notebook-runner","owner":"vanvalenlab","description":"Runs parameterized Jupyter notebooks with papermill on google cloud compute instances","archived":false,"fork":false,"pushed_at":"2020-06-04T19:55:32.000Z","size":8,"stargazers_count":1,"open_issues_count":0,"forks_count":1,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-02-23T08:41:38.352Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/vanvalenlab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2020-06-04T19:55:09.000Z","updated_at":"2021-05-28T17:49:46.000Z","dependencies_parsed_at":"2023-03-13T16:26:09.882Z","dependency_job_id":null,"html_url":"https://github.com/vanvalenlab/cloud-notebook-runner","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/vanvalenlab/cloud-notebook-runner","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vanvalenlab%2Fcloud-notebook-runner","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vanvalenlab%2Fcloud-notebook-runner/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vanvalenlab%2Fcloud-notebook-runner/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vanvalenlab%2Fcloud-notebook-runner/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/vanvalenlab","download_url":"https://codeload.github.com/vanvalenlab/cloud-notebook-runner/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vanvalenlab%2Fcloud-notebook-runner/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":265846866,"owners_count":23838159,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-09T14:15:10.981Z","updated_at":"2025-12-31T14:25:24.238Z","avatar_url":"https://github.com/vanvalenlab.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Notebook Runner\nThis package uses google cloud's python client API to submit parameterized Jupyter notebooks to run on self-deleting google compute engine instances. While our lab's use for this is to train deep learning models, it can be extended to other notebooks. The NotebookRunner class does the following\n* Collect a list of parameters for a parameterized Jupyter notebook that can run on papermill\n* Collect configuration for google cloud instances\n* Collect information of which Docker image to run, which data folder to mount to /data in the image, and which folder contains saved data (like trained models and bench marks)\n* Create an instance with the specified configuration\n* Run the notebook with papermill with the specified Docker image with the specified parameters\n* Delete the created instance\n\nTo work, this library needs you to a few things prior to installation\n* You need to have a google cloud account\n* You need to have your credentials downloaded as a json called gcloud_auth.json\n\nAfter installation, when starting the docker image, you need to do the following\n* Mount the folder with gcloud_auth.json into the /root/.config/gcloud folder - e.g.\n```bash\nsudo docker run -it --privileged \\\n\t-p 8888:8888 \\\n\t-v ${USER}/path/to/folder:/root/.config/gcloud \\\n\t${USER}/cloud-notebook-runner:latest bash\n```","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fvanvalenlab%2Fcloud-notebook-runner","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fvanvalenlab%2Fcloud-notebook-runner","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fvanvalenlab%2Fcloud-notebook-runner/lists"}