{"id":30019703,"url":"https://github.com/veupathdb/blat-nextflow","last_synced_at":"2026-02-08T13:35:52.050Z","repository":{"id":49811311,"uuid":"516871809","full_name":"VEuPathDB/blat-nextflow","owner":"VEuPathDB","description":"Nextflow Conversion of GenomeAlignWithGfClientTask","archived":false,"fork":false,"pushed_at":"2025-04-01T20:19:03.000Z","size":40,"stargazers_count":0,"open_issues_count":0,"forks_count":1,"subscribers_count":16,"default_branch":"main","last_synced_at":"2025-08-06T09:50:38.765Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/VEuPathDB.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2022-07-22T19:57:35.000Z","updated_at":"2025-04-01T20:19:01.000Z","dependencies_parsed_at":"2024-08-13T19:18:22.248Z","dependency_job_id":"f73fb4fe-00d1-4eec-b7ff-784e82d9a86a","html_url":"https://github.com/VEuPathDB/blat-nextflow","commit_stats":null,"previous_names":["veupathdb/blat-nextflow"],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/VEuPathDB/blat-nextflow","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/VEuPathDB%2Fblat-nextflow","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/VEuPathDB%2Fblat-nextflow/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/VEuPathDB%2Fblat-nextflow/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/VEuPathDB%2Fblat-nextflow/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/VEuPathDB","download_url":"https://codeload.github.com/VEuPathDB/blat-nextflow/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/VEuPathDB%2Fblat-nextflow/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29231509,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-08T13:10:22.947Z","status":"ssl_error","status_checked_at":"2026-02-08T13:08:18.779Z","response_time":57,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-08-06T01:20:48.693Z","updated_at":"2026-02-08T13:35:52.045Z","avatar_url":"https://github.com/VEuPathDB.png","language":"Nextflow","funding_links":[],"categories":[],"sub_categories":[],"readme":"THIS REPO IS 🚧 UNDER CONSTRUCTION 🚧 and NOT Used in ANY production CODE\n# Nextflow Conversion of GenomeAlignWithGfClientTask\n\n***\u003cp align=center\u003eblat\u003c/p\u003e***  \n```mermaid\nflowchart TD\n    p0((Channel.fromPath))\n    p1([splitFasta])\n    p2(( ))\n    p3[blat:runBlat]\n    p4([collectFile])\n    p5(( ))\n    p0 --\u003e p1\n    p1 --\u003e|seqs| p3\n    p2 --\u003e|data.2bit| p3\n    p3 --\u003e p4\n    p4 --\u003e p5\n```\n### Get Started\n  * Install Nextflow\n    \n    `curl https://get.nextflow.io | bash`\n\n## Usage\n\nMain parameters:\n\n| param         | value type        | description  |\n| ------------- | ------------- | ------------ |\n| seqFile  | string | Path to input fasta file |\n| fastaSubsetSize | integer | How many sequences per split of input file |\n| databasePath | string | Path to database Files |\n| outputDir  | string  | publish directory |\n| maxIntron | integer | Maximum intron size (Default 750000) |\n| dbType | string | \"dna\" / \"prot\" / \"dnax\" (DNA sequence translated in six frames to protein). 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