{"id":30019706,"url":"https://github.com/veupathdb/cbil","last_synced_at":"2026-01-20T16:22:46.681Z","repository":{"id":51000808,"uuid":"192974430","full_name":"VEuPathDB/CBIL","owner":"VEuPathDB","description":null,"archived":false,"fork":false,"pushed_at":"2025-12-13T20:09:11.000Z","size":14866,"stargazers_count":0,"open_issues_count":1,"forks_count":3,"subscribers_count":25,"default_branch":"master","last_synced_at":"2025-12-15T15:24:07.484Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Perl","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/VEuPathDB.png","metadata":{"files":{"readme":"README.org","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2019-06-20T19:11:30.000Z","updated_at":"2025-12-13T20:08:57.000Z","dependencies_parsed_at":"2023-01-30T05:00:31.933Z","dependency_job_id":"7d14b4cd-f373-4e6a-b140-9c6164762b37","html_url":"https://github.com/VEuPathDB/CBIL","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/VEuPathDB/CBIL","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/VEuPathDB%2FCBIL","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/VEuPathDB%2FCBIL/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/VEuPathDB%2FCBIL/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/VEuPathDB%2FCBIL/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/VEuPathDB","download_url":"https://codeload.github.com/VEuPathDB/CBIL/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/VEuPathDB%2FCBIL/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28606909,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-20T16:10:39.856Z","status":"ssl_error","status_checked_at":"2026-01-20T16:10:39.493Z","response_time":117,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-08-06T01:20:51.117Z","updated_at":"2026-01-20T16:22:46.676Z","avatar_url":"https://github.com/VEuPathDB.png","language":"Perl","funding_links":[],"categories":[],"sub_categories":[],"readme":"* CBIL\n\n  This repository is a shared resource created by the [[https://www.cbil.upenn.edu/][Computational Biology and Informatics Laboratory (CBIL)]] in Penn's Institute for Biomedical Informatics.  It contains a variety of scripts and packages for bioinformatics applications and other general purpose code.\n\n** Dependencies\n\n   + yarn / npm / ant\n   + environment variables for GUS_HOME and PROJECT_HOME\n   + Internal Dependencies\n     + [[https://github.com/VEuPathDB/install][install]]\n\n** Installation instructions.\n\n   + bld CBIL\n\n** Manifest\n\n   + Bio :: library of value objects for biologically meaningful entities and file types.  deprecated in favor of Bioperl.\n   + Cider :: set of packages that help generate a website with using page body parts, a navbar, and a configurable look-and-feel.  \n   + CSP :: CBIL Style Police (CSP) is a Perl package for generating HTML pages and forms in a principled manner.   \n   + HQ :: library of value objects used when computing hierarchical entropy values\n   + ISA :: readers and library of value objects for [[https://isa-specs.readthedocs.io/en/latest/isatab.html][ISA-Tab]] Format\n   + StudyAssayResults :: Modules for analyzing expression data (Microarray and RNASeq) and other data types.  \n   + Util :: Helper modules for a variety of tasks\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fveupathdb%2Fcbil","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fveupathdb%2Fcbil","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fveupathdb%2Fcbil/lists"}