{"id":21586446,"url":"https://github.com/vida-nyu/bdi-viz","last_synced_at":"2025-05-05T03:46:19.167Z","repository":{"id":261333787,"uuid":"863135363","full_name":"VIDA-NYU/bdi-viz","owner":"VIDA-NYU","description":null,"archived":false,"fork":false,"pushed_at":"2025-05-01T04:43:25.000Z","size":752,"stargazers_count":2,"open_issues_count":4,"forks_count":0,"subscribers_count":10,"default_branch":"main","last_synced_at":"2025-05-05T03:46:13.289Z","etag":null,"topics":["bdf-toolbox","data-harmonization","data-integration"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/VIDA-NYU.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-09-25T19:18:42.000Z","updated_at":"2025-05-01T04:43:28.000Z","dependencies_parsed_at":"2024-11-06T01:41:28.140Z","dependency_job_id":"44cc6cd9-2bd0-4ffe-9d07-3bb519b698b3","html_url":"https://github.com/VIDA-NYU/bdi-viz","commit_stats":null,"previous_names":["vida-nyu/bdi-viz"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/VIDA-NYU%2Fbdi-viz","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/VIDA-NYU%2Fbdi-viz/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/VIDA-NYU%2Fbdi-viz/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/VIDA-NYU%2Fbdi-viz/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/VIDA-NYU","download_url":"https://codeload.github.com/VIDA-NYU/bdi-viz/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":252436239,"owners_count":21747467,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bdf-toolbox","data-harmonization","data-integration"],"created_at":"2024-11-24T15:13:43.278Z","updated_at":"2025-05-05T03:46:19.144Z","avatar_url":"https://github.com/VIDA-NYU.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# bdi-viz\n[![Tests](https://github.com/VIDA-NYU/bdi-viz/actions/workflows/build.yml/badge.svg)](https://github.com/VIDA-NYU/bdi-viz/actions/workflows/build.yml)\n[![Lint](https://github.com/VIDA-NYU/bdi-viz/actions/workflows/lint.yml/badge.svg)](https://github.com/VIDA-NYU/bdi-viz/actions/workflows/lint.yml)\n[![Documentation Status](https://readthedocs.org/projects/bdi-viz/badge/?version=latest)](https://bdi-viz.readthedocs.io/en/latest/)\n\n\n## Contents\n\n- [1. Introduction](#sparkle-1-introduction)\n- [2. Installation](#package-2-installation)\n- [3. Quick Start](#rocket-3-quick-start)\n- [4. Documentation](#page_facing_up-4-documentation)\n  - [4.1 Read the Docs](#41-read-the-docs)\n  - [4.2 Demo Video](#42-demo-video)\n\n## :sparkle: 1. Introduction\n\nBDIViz is a powerful, interactive tool designed as an extension to [BDIKit](https://github.com/VIDA-NYU/bdi-kit) to assist biomedical researchers and domain experts in performing schema matching tasks. Built to address the challenges of matching complex biomedical datasets, BDIViz leverages a visual approach to streamline the process and enhance both speed and accuracy.\n\nKey features of BDIViz include:\n\n- **Interactive Heatmap** for exploring and comparing matching candidates.\n- **Value Comparisons** Panel for analyzing similarities between attributes.\n- **Detailed Analysis** Panel offering in-depth insights into attribute value distributions.\n- **Filtering \u0026 Refinement Tools** to customize and adjust matching candidates based on datatype and similarity scores.\n- **Expert-in-the-Loop Workflow** allowing users to iteratively accept, reject, or refine matches, keeping the expert in control of decision-making.\n\nBDIViz is designed to be integrated with Python notebooks, providing a flexible and easy-to-use tool for domain-specific schema matching in biomedical research and beyond.\n\n## :package: 2. Installation\n\nTo use ``BDI-Viz``, install it using pip:\n\n```bash\npip install bdi-viz\n```\n\n\n## :rocket: 3. Quick Start\n``BDI-Viz 1.0`` is built leveraging [Panel](https://panel.holoviz.org/). The application is designed to provide a user-friendly interface on jupyter notebooks. Where users can explore the schema matching recommandations, interact with the result, and pass them to the next step of the data integration process.\n\n```python\nimport pandas as pd\nfrom bdiviz import BDISchemaMatchingHeatMap\n\n# Load the data\nsource_df = pd.read_csv('data/source.csv')\ntarget_df = pd.read_csv('data/target.csv')\n\n# Render the BDI-Viz Heatmap\nheatmap_manager = BDISchemaMatchingHeatMap(\n    source=source_df,\n    target=target_df,\n    top_k=20,\n)\nheatmap_manager.plot_heatmap()\n```\n\nThe following interface will be displayed in the jupyter notebook:\n![BDIViz Demo](docs/bdiviz-demo.png)\n\n\n## :page_facing_up: 4. Documentation\n\n### 4.1 Read the Docs\nFor more information, please refer to the [documentation](https://bdi-viz.readthedocs.io/en/latest/).\n\n### 4.2 Demo Video\n[BDIViz Demo](https://drive.google.com/file/d/1eAbDicO0oXIbbVg56m3H8xdNDDsBGBLI/view?usp=drive_link)\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fvida-nyu%2Fbdi-viz","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fvida-nyu%2Fbdi-viz","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fvida-nyu%2Fbdi-viz/lists"}