{"id":44821266,"url":"https://github.com/virtool/workflow-build-index","last_synced_at":"2026-04-28T19:01:21.405Z","repository":{"id":40464031,"uuid":"313723002","full_name":"virtool/workflow-build-index","owner":"virtool","description":"A workflow for building Virtool reference indexes","archived":false,"fork":false,"pushed_at":"2026-04-27T21:17:09.000Z","size":672,"stargazers_count":1,"open_issues_count":0,"forks_count":4,"subscribers_count":2,"default_branch":"main","last_synced_at":"2026-04-27T23:13:55.808Z","etag":null,"topics":["virtool","workflow"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":false,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/virtool.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":".github/CODEOWNERS","security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2020-11-17T19:34:48.000Z","updated_at":"2026-04-27T21:15:16.000Z","dependencies_parsed_at":"2024-01-20T02:04:36.367Z","dependency_job_id":"e2be086b-e18a-4755-ae8a-1ece525fd9d1","html_url":"https://github.com/virtool/workflow-build-index","commit_stats":null,"previous_names":[],"tags_count":24,"template":false,"template_full_name":null,"purl":"pkg:github/virtool/workflow-build-index","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/virtool%2Fworkflow-build-index","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/virtool%2Fworkflow-build-index/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/virtool%2Fworkflow-build-index/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/virtool%2Fworkflow-build-index/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/virtool","download_url":"https://codeload.github.com/virtool/workflow-build-index/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/virtool%2Fworkflow-build-index/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":32394478,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-04-28T14:34:11.604Z","status":"ssl_error","status_checked_at":"2026-04-28T14:32:37.009Z","response_time":56,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["virtool","workflow"],"created_at":"2026-02-16T20:36:29.401Z","updated_at":"2026-04-28T19:01:21.388Z","avatar_url":"https://github.com/virtool.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# workflow-build-index\n\nA workflow for building Virtool reference indexes.\n\n## Steps\n\n1. Build index of default isolates using `bowtie2-build`.\n2. Compress FASTA file.\n3. Upload FASTA and Bowtie2 index files to server.\n4. Finalize the index resource, which allows it to be used in analysis workflows.\n\n## Contributing\n\n### Unit Tests\n\n#### Virtual Environment\n\n```shell script\npoetry install\npoetry run pytest\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fvirtool%2Fworkflow-build-index","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fvirtool%2Fworkflow-build-index","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fvirtool%2Fworkflow-build-index/lists"}