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status](https://img.shields.io/github/actions/workflow/status/virtualcell/libvcell/main.yml?branch=main)](https://github.com/virtualcell/libvcell/actions/workflows/main.yml?query=branch%3Amain)\n[![codecov](https://codecov.io/gh/virtualcell/libvcell/branch/main/graph/badge.svg)](https://codecov.io/gh/virtualcell/libvcell)\n[![Commit activity](https://img.shields.io/github/commit-activity/m/virtualcell/libvcell)](https://img.shields.io/github/commit-activity/m/virtualcell/libvcell)\n[![License](https://img.shields.io/github/license/virtualcell/libvcell)](https://img.shields.io/github/license/virtualcell/libvcell)\n\nlibvcell is a subset of VCell algorithms intended to support the [pyvcell](https://pypi.org/project/pyvcell/) python package.\n\n- **Github repository**: \u003chttps://github.com/virtualcell/libvcell/\u003e\n- **Documentation** \u003chttps://virtualcell.github.io/libvcell/\u003e\n\n## Getting started with your project\n\nFirst, create a repository on GitHub with the same name as this project, and then run the following commands:\n\n```bash\ngit init -b main\ngit add .\ngit commit -m \"init commit\"\ngit remote add origin git@github.com:virtualcell/libvcell.git\ngit push -u origin main\n```\n\nFinally, install the environment and the pre-commit hooks with\n\n```bash\nmake install\n```\n\nYou are now ready to start development on your project!\nThe CI/CD pipeline will be triggered when you open a pull request, merge to main, or when you create a new release.\n\nTo finalize the set-up for publishing to PyPI or Artifactory, see [here](https://fpgmaas.github.io/cookiecutter-poetry/features/publishing/#set-up-for-pypi).\nFor activating the automatic documentation with MkDocs, see [here](https://fpgmaas.github.io/cookiecutter-poetry/features/mkdocs/#enabling-the-documentation-on-github).\nTo enable the code coverage reports, see [here](https://fpgmaas.github.io/cookiecutter-poetry/features/codecov/).\n\n## Releasing a new version\n\n- Create an API Token on [PyPI](https://pypi.org/).\n- Add the API Token to your projects secrets with the name `PYPI_TOKEN` by visiting [this page](https://github.com/virtualcell/libvcell/settings/secrets/actions/new).\n- Create a [new release](https://github.com/virtualcell/libvcell/releases/new) on Github.\n- Create a new tag in the form `*.*.*`.\n- For more details, see [here](https://fpgmaas.github.io/cookiecutter-poetry/features/cicd/#how-to-trigger-a-release).\n\n---\n\nRepository initiated with [fpgmaas/cookiecutter-poetry](https://github.com/fpgmaas/cookiecutter-poetry).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fvirtualcell%2Flibvcell","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fvirtualcell%2Flibvcell","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fvirtualcell%2Flibvcell/lists"}