{"id":18454722,"url":"https://github.com/vitessce/vitesscer","last_synced_at":"2025-07-14T16:06:41.807Z","repository":{"id":39790806,"uuid":"299805279","full_name":"vitessce/vitessceR","owner":"vitessce","description":"R API and htmlwidget for 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src=\"./img/hexsticker.png\" width=\"230\" align=\"right\"/\u003e \n\n# vitessce-r\n\n![R package version](https://img.shields.io/github/r-package/v/vitessce/vitessceR) [![Vitessce JS dependency version](https://img.shields.io/badge/dynamic/json.svg?url=https%3A%2F%2Fraw.githubusercontent.com%2Fvitessce%2FvitessceR%2Fmain%2Fpackage.json\u0026label=vitessce\u0026query=$.dependencies.vitessce\u0026colorB=blue)](https://github.com/vitessce/vitessce/blob/master/CHANGELOG.md) [![docs](https://img.shields.io/badge/docs-📖-57B4E9.svg)](https://vitessce.github.io/vitessceR/)\n\nR API and htmlwidget facilitating interactive visualization of spatial single-cell data with [Vitessce](https://github.com/vitessce/vitessce).\n\n## Installation\n\nInstallation requires R 4.0.0 or greater.\n\n```r\ninstall.packages(\"devtools\")\ndevtools::install_github(\"vitessce/vitessceR\")\n```\n\n## Usage\n\n```r\nlibrary(vitessceR)\n\nvc \u003c- VitessceConfig$new()\nvc$widget()\n```\n\nFor full examples, visit the [documentation](https://vitessce.github.io/vitessceR/).\n\nFor questions and help with using the package, please open a [discussion](https://github.com/vitessce/vitessceR/discussions).\n\n\u003cimg src=\"./img/screenshot.png\" width=\"600\" alt=\"Screenshot of RStudio\"\u003e\n\n## Development\n\n```sh\nnpm install\nnpm run build\n```\n\n```r\nsetwd(\"path/to/vitessceR\")\ninstall.packages(\"htmlwidgets\")\ninstall.packages(\"devtools\")\ndevtools::install()\ndevtools::load_all()\n```\n\n## Testing\n\n```r\ndevtools::check()\ndevtools::test()\n```\n\n## Documentation\n\n```r\ninstall.packages(\"devtools\")\ninstall.packages(\"pkgdown\")\ndevtools::document()\npkgdown::build_site()\n```\n\nDocumentation is automatically deployed to GitHub pages with GitHub actions.\n\n## Deployment\n\nCurrently, the package is only distributed through GitHub.\nIn the future, we plan to submit the package to CRAN or Bioconductor.\n\nTo increment the package version, update it in [`DESCRIPTION`](https://github.com/vitessce/vitessceR/blob/master/DESCRIPTION#L4).\n\n## Resources\n\n- [htmlwidgets: creating a widget](http://www.htmlwidgets.org/develop_intro.html)\n- [r leaflet](https://github.com/rstudio/leaflet)\n- [R packages](https://r-pkgs.org/)\n- [roxygen2 syntax](https://cran.r-project.org/web/packages/roxygen2/vignettes/rd-formatting.html)\n- [R6](https://r6.r-lib.org/index.html)\n- [R6 roxygen2 syntax](https://www.tidyverse.org/blog/2019/11/roxygen2-7-0-0/#r6-documentation)\n- [plumber: programmatic usage](https://www.rplumber.io/articles/programmatic-usage.html)\n- [pkgdown](https://pkgdown.r-lib.org/)\n- [S4](http://adv-r.had.co.nz/S4.html)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fvitessce%2Fvitesscer","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fvitessce%2Fvitesscer","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fvitessce%2Fvitesscer/lists"}