{"id":19629523,"url":"https://github.com/vjcitn/cdnmp2c","last_synced_at":"2026-03-02T07:31:32.770Z","repository":{"id":161705673,"uuid":"636368554","full_name":"vjcitn/CDNMp2c","owner":"vjcitn","description":"Project definitions for pathway to cloud for CDNM","archived":false,"fork":false,"pushed_at":"2023-05-04T17:46:16.000Z","size":304,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-02-26T20:31:09.217Z","etag":null,"topics":["computing","genetics","genomics"],"latest_commit_sha":null,"homepage":"https://vjcitn.github.io/CDNMp2c/","language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/vjcitn.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-05-04T17:36:37.000Z","updated_at":"2023-05-04T17:39:12.000Z","dependencies_parsed_at":null,"dependency_job_id":"21ffef14-2c74-4cba-aedb-a2e493304526","html_url":"https://github.com/vjcitn/CDNMp2c","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/vjcitn/CDNMp2c","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vjcitn%2FCDNMp2c","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vjcitn%2FCDNMp2c/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vjcitn%2FCDNMp2c/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vjcitn%2FCDNMp2c/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/vjcitn","download_url":"https://codeload.github.com/vjcitn/CDNMp2c/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vjcitn%2FCDNMp2c/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29994990,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-03-02T01:47:34.672Z","status":"online","status_checked_at":"2026-03-02T02:00:07.342Z","response_time":60,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["computing","genetics","genomics"],"created_at":"2024-11-11T11:59:10.546Z","updated_at":"2026-03-02T07:31:32.724Z","avatar_url":"https://github.com/vjcitn.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"\n## Purpose\n\nProvide general access to use cases for a transition to cloud\ncomputing for a research lab focused on lung disease genetics\nand personalized genomic medicine\n\nSee the \"Get started\" and \"Articles\" tabs above for details.  As a taster, we have\n\n### Carey group\n\n#### BiocHail\n\nWe have an R package in Bioconductor that runs through the following\ntopics (this is just a screenshot, visit [BiocHail at Bioconductor](http://bioconductor.org/packages/release/bioc/vignettes/BiocHail/inst/doc/gwas_tut.html) for the real thing\nat Bioconductor for details):\n\n![](man/figures/bhail.jpg)\n\n#### BiocT2T\n\nWe want to accelerate adoption of the new telomere-to-telomere\ngenome reference.  To get the flavor we have an app that looks like:\n\n![](man/figures/t2tapp.jpg)\n\nFull details at VJC's [pkgdown site](https://vjcitn.github.io/BiocT2T)\n\n\u003c!--\n\nSee the Articles tab for full details.  Here are some tasters:\n\n## BiocHail \n\nThis is only a snapshot of a hail.is curriculum ... see [BiocHail](http://bioconductor.org/packages/release/bioc/vignettes/BiocHail/inst/doc/gwas_tut.html) for the real thing in\nBioconductor\n\n![](man/figures/bhail.jpg)\n\n## BiocT2T\n\nInstall vjcitn/BiocT2T to use the stratapp function to investigate population\nstratification\n\n![](man/figures/t2tapp.jpg)\n \n--\u003e\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fvjcitn%2Fcdnmp2c","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fvjcitn%2Fcdnmp2c","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fvjcitn%2Fcdnmp2c/lists"}