{"id":23364138,"url":"https://github.com/vmikk/phylotwin","last_synced_at":"2025-04-07T22:24:34.636Z","repository":{"id":268394712,"uuid":"902837385","full_name":"vmikk/phylotwin","owner":"vmikk","description":"PhyloTwin","archived":false,"fork":false,"pushed_at":"2025-03-15T09:01:23.000Z","size":45614,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-03-15T10:18:37.740Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/vmikk.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-12-13T11:19:52.000Z","updated_at":"2025-03-15T09:01:26.000Z","dependencies_parsed_at":"2025-02-13T23:51:07.419Z","dependency_job_id":null,"html_url":"https://github.com/vmikk/phylotwin","commit_stats":null,"previous_names":["vmikk/phylotwin"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vmikk%2Fphylotwin","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vmikk%2Fphylotwin/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vmikk%2Fphylotwin/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vmikk%2Fphylotwin/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/vmikk","download_url":"https://codeload.github.com/vmikk/phylotwin/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247738654,"owners_count":20987883,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-21T13:14:20.553Z","updated_at":"2025-04-07T22:24:34.576Z","avatar_url":"https://github.com/vmikk.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"\n# PhyloTwin - Diversity estimation pipeline\n\nPhyloTwin is an automated pipeline for the analysis of phylogenetic diversity using GBIF occurrence data. \nIt is a successor of [**PhyloNext**](https://phylonext.github.io/) with significantly improved performance and new features.\n\n\n## Installation\n\n```bash\nnextflow pull vmikk/phylotwin -r main\n```\n\n## Funding\n\nThe software was developed as part of the [Prototype Biodiversity Digital Twin (BioDT)](https://biodt.eu/) project.\nMore information about the project can be found at [https://biodt.eu/use-cases/phylogenetic-diversity](https://biodt.eu/use-cases/phylogenetic-diversity).\n\n\n## Citation\n\nMikryukov V, Abarenkov K, Jeppesen T, Schigel D, Frøslev T (2024). Prototype biodiversity digital twin: Phylogenetic diversity // Research Ideas and Outcomes, 10, e124988. https://doi.org/10.3897/rio.10.e124988\n\nMikryukov V, Abarenkov K, Laffan S, Robertson T, McTavish EJ, Jeppesen TS, Waller J, Blissett M, Kõljalg U, Miller JT (2024). PhyloNext: A pipeline for phylogenetic diversity analysis of GBIF-mediated data // BMC Ecology and Evolution, 24(1), 76. https://doi.org/10.1186/s12862-024-02256-9\n\n\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fvmikk%2Fphylotwin","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fvmikk%2Fphylotwin","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fvmikk%2Fphylotwin/lists"}