{"id":15347383,"url":"https://github.com/vtlim/vtlim","last_synced_at":"2026-02-01T23:33:03.981Z","repository":{"id":182905076,"uuid":"669294588","full_name":"vtlim/vtlim","owner":"vtlim","description":null,"archived":false,"fork":false,"pushed_at":"2024-07-08T21:26:07.000Z","size":25,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-06-21T06:03:32.533Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/vtlim.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-07-21T20:56:47.000Z","updated_at":"2024-07-08T21:26:10.000Z","dependencies_parsed_at":"2024-07-09T02:10:03.667Z","dependency_job_id":"e1fe9894-8445-4e85-a24f-aa07674fc3b5","html_url":"https://github.com/vtlim/vtlim","commit_stats":{"total_commits":13,"total_committers":1,"mean_commits":13.0,"dds":0.0,"last_synced_commit":"d162f47578d1ae80f33f827770f1b79120d47daf"},"previous_names":["vtlim/vtlim"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/vtlim/vtlim","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vtlim%2Fvtlim","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vtlim%2Fvtlim/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vtlim%2Fvtlim/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vtlim%2Fvtlim/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/vtlim","download_url":"https://codeload.github.com/vtlim/vtlim/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vtlim%2Fvtlim/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28994918,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-01T23:10:54.274Z","status":"ssl_error","status_checked_at":"2026-02-01T23:10:47.298Z","response_time":56,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-01T11:33:06.639Z","updated_at":"2026-02-01T23:33:03.976Z","avatar_url":"https://github.com/vtlim.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"### 👋 Hi! I'm Victoria\n\nI write software docs. Formerly occupied with computational chemistry research and pharmaceutical patent prosecution. Most of my repos pertain to tech writing, science, or patents.\n\n#### 📝 Technical writing\n\n* [tech-docs](https://github.com/vtlim/tech-docs): Jupyter notebooks for technical exploration (e.g., Kafka + Druid); scripts for docs infrastructure\n\n#### 🔬 Science\n\n* [plot_potential](https://github.com/vtlim/plot_potential): visualize functions that comprise molecular mechanics force fields (__figures for presentations__)\n* [misc](https://github.com/vtlim/misc): basic stats and plots (__figures for [publications](https://scholar.google.com/citations?hl=en\u0026user=aGYEEPUAAAAJ\u0026view_op=list_works)__);  configuration for Grace and VMD; OpenEye OEChem utilities\n* [dihedral-scan](https://github.com/vtlim/dihedral-scan): determine the potential energy function of a dihedral angle in a molecule using NAMD\n* [benchmarkff](https://github.com/MobleyLab/benchmarkff): comparison of optimized geometries and energies from various force fields with respect to a QM reference\n* [off_psi4](https://github.com/vtlim/off_psi4): quantum mechanical analysis of molecular conformers (moved to [MobleyLab/quanformer](https://github.com/MobleyLab/quanformer))\n* [permeability](https://github.com/vtlim/permeability): data analysis from NAMD simulations on calculating membrane permeabilities\n* [GLIC](https://github.com/vtlim/GLIC): analysis and visualization for cryo-EM density-fitting simluations using GROMACS\n* [Hv1](https://github.com/vtlim/Hv1): setup and analysis of free energy perturbation calculations of the Hv1 protein using NAMD\n* [mismatch](https://github.com/vtlim/mismatch): web app to find mismatched base pairs between hybridized DNA sequences\n\n#### 🌎  Patents\n\n* [patfam](https://github.com/vtlim/patfam): web app for analysis of patent families across different jurisdictions (collaborations welcome! 👯)\n* [textsmoosh](https://github.com/vtlim/textsmoosh): web app to process and combine multi-line text into a single line\n* [excel](https://github.com/vtlim/excel): (private) scripts for Microsoft Excel to process thousands of _in vitro_ and _in vivo_ hit-to-lead results\n\n\n\u003c!--\n**vtlim/vtlim** is a ✨ _special_ ✨ repository because its `README.md` (this file) appears on your GitHub profile.\n\nHere are some ideas to get you started:\n\n- 🔭 I’m currently working on ...\n- 🌱 I’m currently learning ...\n- 👯 I’m looking to collaborate on ...\n- 🤔 I’m looking for help with ...\n- 💬 Ask me about ...\n- 📫 How to reach me: ...\n- 😄 Pronouns: ...\n- ⚡ Fun fact: ...\n--\u003e\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fvtlim%2Fvtlim","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fvtlim%2Fvtlim","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fvtlim%2Fvtlim/lists"}