{"id":14066422,"url":"https://github.com/waldronlab/curatedMetagenomicDataCuration","last_synced_at":"2025-07-29T23:31:02.700Z","repository":{"id":48175914,"uuid":"95220777","full_name":"waldronlab/curatedMetagenomicDataCuration","owner":"waldronlab","description":"Sample Metadata Curation for curatedMetagenomicData","archived":false,"fork":false,"pushed_at":"2025-07-22T19:53:52.000Z","size":53103,"stargazers_count":29,"open_issues_count":26,"forks_count":24,"subscribers_count":15,"default_branch":"master","last_synced_at":"2025-07-22T21:24:51.105Z","etag":null,"topics":["r01ca230551"],"latest_commit_sha":null,"homepage":"https://waldronlab.io/curatedMetagenomicDataCuration/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/waldronlab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2017-06-23T13:03:23.000Z","updated_at":"2025-07-22T19:53:56.000Z","dependencies_parsed_at":"2024-02-19T18:24:00.342Z","dependency_job_id":"648bbd15-dd6a-4955-9b65-56ae5e3c2658","html_url":"https://github.com/waldronlab/curatedMetagenomicDataCuration","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/waldronlab/curatedMetagenomicDataCuration","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/waldronlab%2FcuratedMetagenomicDataCuration","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/waldronlab%2FcuratedMetagenomicDataCuration/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/waldronlab%2FcuratedMetagenomicDataCuration/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/waldronlab%2FcuratedMetagenomicDataCuration/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/waldronlab","download_url":"https://codeload.github.com/waldronlab/curatedMetagenomicDataCuration/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/waldronlab%2FcuratedMetagenomicDataCuration/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":267779967,"owners_count":24143200,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-07-29T02:00:12.549Z","response_time":2574,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["r01ca230551"],"created_at":"2024-08-13T07:05:05.481Z","updated_at":"2025-07-29T23:31:01.475Z","avatar_url":"https://github.com/waldronlab.png","language":"R","funding_links":[],"categories":["R"],"sub_categories":[],"readme":"# Quick Start\n\nThis package checks metadata curation for curatedMetagenomicData. To use it:\n\n1. Look at the [template](https://github.com/waldronlab/curatedMetagenomicDataCuration/blob/master/inst/extdata/template.csv) and [already curated files](https://github.com/waldronlab/curatedMetagenomicDataCuration/tree/master/inst/curated) to see what curated files should look like.\n2. Place a tab-separated file ending in \"_metadata.tsv\" in a directory under inst/curation. Commit and create a pull \nrequest.  Or if you don't like git, use Github.com's [\"Upload Files\" button](https://github.com/waldronlab/curatedMetagenomicDataCuration/tree/master/inst/curated) to upload to create a pull request without the need to use git.\n3. Does the new dataset pass all checks? It takes 3-4 minutes for the check to be completed (TODO: add overall badge)\n4. See the [detailed syntax-checking report](https://waldronlab.io/curatedMetagenomicDataCuration/articles/curatedMetagenomicDataCuration.html).\n\nIf you don't want to wait for GitHub Actions to finish checking, you can check on your own computer:\n\n```\nBiocManager::install(\"waldronlab/curatedMetagenomicDataCuration\", build_vignettes=TRUE)\nbrowseVignettes(\"curatedMetagenomicDataCuration\")\n```\n\n# More complete introduction\n\nThe complete reference for curators is provided at this page's [wiki](https://github.com/waldronlab/curatedMetagenomicDataCuration/wiki).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fwaldronlab%2FcuratedMetagenomicDataCuration","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fwaldronlab%2FcuratedMetagenomicDataCuration","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fwaldronlab%2FcuratedMetagenomicDataCuration/lists"}