{"id":23204706,"url":"https://github.com/warelab/gramene-genetree-vis","last_synced_at":"2025-08-19T01:32:01.582Z","repository":{"id":3963554,"uuid":"50972697","full_name":"warelab/gramene-genetree-vis","owner":"warelab","description":"React client-side vis for Compara gene tree","archived":false,"fork":false,"pushed_at":"2024-05-20T16:59:22.000Z","size":8375,"stargazers_count":3,"open_issues_count":31,"forks_count":1,"subscribers_count":4,"default_branch":"master","last_synced_at":"2024-11-30T10:46:50.577Z","etag":null,"topics":["gramene","gramene-search","reactjs"],"latest_commit_sha":null,"homepage":"","language":"JavaScript","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/warelab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-02-03T03:59:13.000Z","updated_at":"2023-04-13T07:03:04.000Z","dependencies_parsed_at":"2024-05-20T18:47:41.160Z","dependency_job_id":null,"html_url":"https://github.com/warelab/gramene-genetree-vis","commit_stats":{"total_commits":367,"total_committers":8,"mean_commits":45.875,"dds":0.3242506811989101,"last_synced_commit":"1101e2bf1ba6050fa0db8af971dc6ffe41be7d4a"},"previous_names":[],"tags_count":64,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/warelab%2Fgramene-genetree-vis","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/warelab%2Fgramene-genetree-vis/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/warelab%2Fgramene-genetree-vis/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/warelab%2Fgramene-genetree-vis/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/warelab","download_url":"https://codeload.github.com/warelab/gramene-genetree-vis/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":230163941,"owners_count":18183315,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["gramene","gramene-search","reactjs"],"created_at":"2024-12-18T16:19:50.724Z","updated_at":"2024-12-18T16:19:51.334Z","avatar_url":"https://github.com/warelab.png","language":"JavaScript","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Gramene Gene Tree Visualization\n\n![gene tree visualization example](https://raw.githubusercontent.com/warelab/gramene-genetree-vis/master/genetree_vis_example.png)\n\n\n\nThe Gramene Gene Tree Visualization is a JavaScript library for interactive visualization of gene tree data. It is primarily developed for use on the [Cold Spring Harbor Laboratory](http://cshl.edu)’s [Gramene](http://gramene.org) web site, but it is self-contained and can be dropped into any other web site.\n\n## Running the Visualization\n\nThe gene tree visualization can be run locally in a stand-alone mode for testing/viewing/developing.\n\n1. Install [Yarn](http://yarnpkg.com), a JavaScript dependency manager.\n\n2. From the project root directory, run Yarn to load dependencies (or install, as needed).\n\n   ```bash\n   % yarn\n   ```\n\n3. Compile and run standalone application in development mode:\n\n    ```bash\n    % yarn run start\n    ```\n\n\n​    Note that the application will connect to `devdata.gramene.org` to load sample data to display.\n\n4. Connect to `http://localhost:3000/` to view the visualization.\n\n\n\n## Misc.\n\nThe development project was created with [Create React App](https://github.com/facebookincubator/create-react-app). You can view [this guide](https://github.com/facebookincubator/create-react-app/blob/master/packages/react-scripts/template/README.md) to for details about that environment.","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fwarelab%2Fgramene-genetree-vis","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fwarelab%2Fgramene-genetree-vis","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fwarelab%2Fgramene-genetree-vis/lists"}