{"id":19669229,"url":"https://github.com/whitews/flowio","last_synced_at":"2025-04-06T01:05:52.522Z","repository":{"id":12048610,"uuid":"14634514","full_name":"whitews/FlowIO","owner":"whitews","description":"A Python library for reading and writing Flow Cytometry Standard (FCS) files","archived":false,"fork":false,"pushed_at":"2025-03-28T22:06:55.000Z","size":12022,"stargazers_count":45,"open_issues_count":2,"forks_count":22,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-03-30T00:05:00.108Z","etag":null,"topics":["cytometry","fcs","fcs-files","flow-cytometry","flow-cytometry-analysis","flow-cytometry-files","immunology","python"],"latest_commit_sha":null,"homepage":"https://flowio.readthedocs.io","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/whitews.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2013-11-23T02:03:08.000Z","updated_at":"2025-03-10T19:01:15.000Z","dependencies_parsed_at":"2023-02-14T19:16:13.605Z","dependency_job_id":"09738502-8e4a-4dcc-9e51-ca237a5052f8","html_url":"https://github.com/whitews/FlowIO","commit_stats":{"total_commits":231,"total_committers":7,"mean_commits":33.0,"dds":0.09090909090909094,"last_synced_commit":"b09e87f5facb52e4e92cd5a1fb11694cbcd49603"},"previous_names":[],"tags_count":17,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/whitews%2FFlowIO","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/whitews%2FFlowIO/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/whitews%2FFlowIO/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/whitews%2FFlowIO/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/whitews","download_url":"https://codeload.github.com/whitews/FlowIO/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247419859,"owners_count":20936012,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["cytometry","fcs","fcs-files","flow-cytometry","flow-cytometry-analysis","flow-cytometry-files","immunology","python"],"created_at":"2024-11-11T16:39:44.772Z","updated_at":"2025-04-06T01:05:52.485Z","avatar_url":"https://github.com/whitews.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# FlowIO\n\n[![PyPI license](https://img.shields.io/pypi/l/flowio.svg?colorB=dodgerblue)](https://pypi.python.org/pypi/flowio/)\n[![PyPI pyversions](https://img.shields.io/pypi/pyversions/flowio.svg)](https://pypi.python.org/pypi/flowio/)\n[![PyPI version](https://img.shields.io/pypi/v/flowio.svg?colorB=blue)](https://pypi.python.org/pypi/flowio/)\n[![DOI](https://zenodo.org/badge/14634514.svg)](https://zenodo.org/badge/latestdoi/14634514)\n\n\n[![Test (master)](https://github.com/whitews/FlowIO/actions/workflows/tests_master.yml/badge.svg)](https://github.com/whitews/FlowIO/actions/workflows/tests_master.yml)\n[![Test (develop)](https://github.com/whitews/FlowIO/actions/workflows/tests_develop.yml/badge.svg)](https://github.com/whitews/FlowIO/actions/workflows/tests_develop.yml)\n[![Coverage](https://codecov.io/gh/whitews/FlowIO/branch/master/graph/badge.svg)](https://codecov.io/gh/whitews/flowio)\n[![Documentation Status](https://readthedocs.org/projects/flowio/badge/?version=latest)](https://flowio.readthedocs.io/en/latest/?badge=latest)\n![PyPI - Downloads](https://img.shields.io/pypi/dm/flowio)\n\n## Overview\n\nFlowIO is a Python library for reading / writing Flow Cytometry Standard (FCS) \nfiles, with zero external dependencies and is compatible with Python 3.7+.\n\nFlowIO retrieves event data exactly as it is encoded in the FCS file: as a \n1-dimensional list without separating the events into channels or performing \nany preprocessing (e.g. applying gain). Metadata stored in the FCS file is \navailable as a dictionary via the 'text' attribute. Basic attributes are also \navailable for commonly accessed properties. For example, the channel count \ncan be used to easily convert the event data to a multi-column NumPy array:\n\n```\nimport flowio\nimport numpy\n\nfcs_data = flowio.FlowData('example.fcs')\nnpy_data = numpy.reshape(fcs_data.events, (-1, fcs_data.channel_count))\n```\n\nFor higher level interaction with flow cytometry data, including GatingML and FlowJo 10 support, \nsee the related [FlowKit](https://github.com/whitews/FlowKit) project.\n\n## Installation\n\nThe recommended way to install FlowIO is via the `pip` command:\n\n```\npip install flowio\n```\n\nOr, if you prefer, you can install from the GitHub source:\n\n```\ngit clone https://github.com/whitews/flowio\ncd flowio\npip install .\n```\n\n## Documentation\n\nThe FlowIO API documentation is available [on ReadTheDocs here](https://flowio.readthedocs.io/en/latest/?badge=latest). If you have any questions about FlowIO or find any bugs [please submit an issue to the GitHub repository here](https://github.com/whitews/FlowIO/issues/new/).\n\n### Changelogs\n\n[Changelogs for versions are available here](https://github.com/whitews/FlowIO/releases)\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fwhitews%2Fflowio","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fwhitews%2Fflowio","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fwhitews%2Fflowio/lists"}