{"id":28433400,"url":"https://github.com/wuxxin/fhir-research","last_synced_at":"2026-04-16T02:32:21.210Z","repository":{"id":295308019,"uuid":"989722690","full_name":"wuxxin/fhir-research","owner":"wuxxin","description":"fhir-research","archived":false,"fork":false,"pushed_at":"2025-06-03T21:13:40.000Z","size":459,"stargazers_count":1,"open_issues_count":1,"forks_count":0,"subscribers_count":0,"default_branch":"main","last_synced_at":"2025-10-19T06:32:27.333Z","etag":null,"topics":["fhir","medical","scipy"],"latest_commit_sha":null,"homepage":"https://wuxxin.github.io/fhir-research/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/wuxxin.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2025-05-24T17:32:23.000Z","updated_at":"2025-06-02T11:00:20.000Z","dependencies_parsed_at":"2025-05-24T20:29:48.234Z","dependency_job_id":"f9dd006d-e245-4b73-8b5b-90682cdd752a","html_url":"https://github.com/wuxxin/fhir-research","commit_stats":null,"previous_names":["wuxxin/fhir-research"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/wuxxin/fhir-research","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/wuxxin%2Ffhir-research","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/wuxxin%2Ffhir-research/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/wuxxin%2Ffhir-research/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/wuxxin%2Ffhir-research/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/wuxxin","download_url":"https://codeload.github.com/wuxxin/fhir-research/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/wuxxin%2Ffhir-research/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":31868495,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-04-15T15:24:51.572Z","status":"online","status_checked_at":"2026-04-16T02:00:06.042Z","response_time":69,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["fhir","medical","scipy"],"created_at":"2025-06-05T18:09:03.388Z","updated_at":"2026-04-16T02:32:21.184Z","avatar_url":"https://github.com/wuxxin.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Jules Lab Experiment\n\n**THIS-IS-AN-EXPERIMENT**, **NO CODE** has been reviewed for **ANY** purpose!\n\n## Python Medical Data Science Project\n\nThis project demonstrates the use of Python for handling and visualizing medical data,\nspecifically focusing on FHIR resources, pandas for data analysis, Bokeh, Matplotlib, and Altair for visualization.\n\nIt includes utilities for creating example FHIR Patient and FHIR Observation data,\nflattening FHIR bundles for analysis and example notebooks in Marimo for visualization.\n\n## Interactive Visualization\n\nYou can explore the visualization interactively:\n\n- **View on GitHub Pages:** [https://wuxxin.github.io/fhir-research/](https://wuxxin.github.io/fhir-research/)\n    - **Run Interactive Marimo in the Browser:** [https://wuxxin.github.io/fhir-research/marimo/](https://wuxxin.github.io/fhir-research/marimo/)\n\n## Setup\n\n```sh\nmake buildenv\n```\n\n## Running\n\n### Interactivly edit the Notebook in Marimo\n\n```bash\nuv run marimo edit notebooks/lab_visualize.py\n```\n\n### Export the matplotlib plot as image\n\n```bash\nuv run python notebooks/lab_visualize.py -o lab-matplotlib.png\n```\n\n![LAB-Plot](lab-matplotlib.png)\n\n## Docs\n\n```bash\nmake docs\n```\n\n## Testing and Linting\n\n**Run Tests**:\n\n```bash\nmake test\n```\n\n**Run Linter**:\n\n```bash\nmake lint\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fwuxxin%2Ffhir-research","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fwuxxin%2Ffhir-research","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fwuxxin%2Ffhir-research/lists"}