{"id":20083746,"url":"https://github.com/y9c/m5c-ubsseq","last_synced_at":"2026-06-09T00:32:06.745Z","repository":{"id":78079450,"uuid":"589094213","full_name":"y9c/m5C-UBSseq","owner":"y9c","description":"Ultrafast bisulfite","archived":false,"fork":false,"pushed_at":"2024-01-09T21:29:14.000Z","size":21,"stargazers_count":0,"open_issues_count":0,"forks_count":1,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-01-09T22:33:10.392Z","etag":null,"topics":["bioinformatics","epitranscriptome","epitranscriptomics","rna"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/y9c.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null}},"created_at":"2023-01-15T02:57:59.000Z","updated_at":"2024-04-23T12:07:19.970Z","dependencies_parsed_at":"2024-04-23T12:19:02.098Z","dependency_job_id":null,"html_url":"https://github.com/y9c/m5C-UBSseq","commit_stats":null,"previous_names":[],"tags_count":1,"template":null,"template_full_name":null,"purl":"pkg:github/y9c/m5C-UBSseq","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/y9c%2Fm5C-UBSseq","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/y9c%2Fm5C-UBSseq/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/y9c%2Fm5C-UBSseq/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/y9c%2Fm5C-UBSseq/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/y9c","download_url":"https://codeload.github.com/y9c/m5C-UBSseq/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/y9c%2Fm5C-UBSseq/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34086664,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-08T02:00:07.615Z","response_time":111,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","epitranscriptome","epitranscriptomics","rna"],"created_at":"2024-11-13T15:48:38.381Z","updated_at":"2026-06-09T00:32:06.723Z","avatar_url":"https://github.com/y9c.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.11046885.svg)](https://doi.org/10.5281/zenodo.11046885)\n\n# m\u003csup\u003e5\u003c/sup\u003eC-UBSseq\n\n## Changelog\n\n- 4/23/2024: rewrite code using polars\n\n## workflow\n\n[![](./docs/flow.svg)](https://github.com/y9c/m5C-UBSseq)\n\n## Citation\n\n- cite this software\n\n  ```BibTex\n  @software{chang_y_2024_11046885,\n      author    = {Chang Y},\n      title     = {y9c/m5C-UBSseq: V0.1},\n      publisher = {Zenodo},\n      version   = {v0.1},\n      doi       = {10.5281/zenodo.11046885},\n      url       = {https://doi.org/10.5281/zenodo.11046885}\n  }\n  ```\n\n- cite the method\n\n  ```BibTex\n  @article{dai_ultrafast_2024,\n      title = {Ultrafast bisulfite sequencing detection of 5-methylcytosine in {DNA} and {RNA}},\n      url = {https://www.nature.com/articles/s41587-023-02034-w},\n      doi = {10.1038/s41587-023-02034-w},\n      author = {Dai, Qing and Ye, Chang and Irkliyenko, Iryna and Wang, Yiding and Sun, Hui-Lung and Gao, Yun and Liu, Yushuai and Beadell, Alana and Perea, José and Goel, Ajay and He, Chuan},\n      date = {2024-01-02},\n  }\n  ```\n\n\u0026nbsp;\n\n\u003cp align=\"center\"\u003e\n\u003cimg\n  src=\"https://raw.githubusercontent.com/y9c/y9c/master/resource/footer_line.svg?sanitize=true\"\n/\u003e\n\u003c/p\u003e\n\u003cp align=\"center\"\u003e\nCopyright \u0026copy; 2021-present\n\u003ca href=\"https://github.com/y9c\" target=\"_blank\"\u003eChang Y\u003c/a\u003e\n\u003c/p\u003e\n\u003cp align=\"center\"\u003e\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fy9c%2Fm5c-ubsseq","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fy9c%2Fm5c-ubsseq","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fy9c%2Fm5c-ubsseq/lists"}