{"id":20046507,"url":"https://github.com/zachcp/flattax","last_synced_at":"2026-06-08T11:33:02.251Z","repository":{"id":146169278,"uuid":"276474080","full_name":"zachcp/flattax","owner":"zachcp","description":"Flat NCBI Taxonomy Table","archived":false,"fork":false,"pushed_at":"2020-10-13T19:27:57.000Z","size":61721,"stargazers_count":2,"open_issues_count":1,"forks_count":0,"subscribers_count":0,"default_branch":"master","last_synced_at":"2026-06-01T19:39:35.223Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/zachcp.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2020-07-01T20:19:35.000Z","updated_at":"2023-04-12T19:43:35.000Z","dependencies_parsed_at":null,"dependency_job_id":"d6e44059-8bb5-4ad2-963f-c3fb3e34f4e8","html_url":"https://github.com/zachcp/flattax","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/zachcp/flattax","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zachcp%2Fflattax","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zachcp%2Fflattax/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zachcp%2Fflattax/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zachcp%2Fflattax/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/zachcp","download_url":"https://codeload.github.com/zachcp/flattax/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zachcp%2Fflattax/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34061122,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-08T02:00:07.615Z","response_time":111,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-13T11:24:23.910Z","updated_at":"2026-06-08T11:33:02.236Z","avatar_url":"https://github.com/zachcp.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"\n# flattax\n\n\u003c!-- badges: start --\u003e\n\u003c!-- badges: end --\u003e\n\nThe goal of `flattax` is to provide a simplified view on NCBI's\ntaxonomic hierarchy. It provides the following datasets:\n\n - `flattax`:  A data.table of NCBI's `new_taxdump/rankedlineage.dmp` file.\n\n## Installatation\n\n\n``` r\n# install from github.\ndevtools::install_github(\"zachcp/flattax\")\n```\n\n\n## Example Usage\n\n```\n\u003e library(flattax)\n\u003e flattax\n          tax_id                     tax_name species genus family order class phylum kingdom\n      1:       1                         root                                                \n      2:  131567           cellular organisms                                                \n      3:    2157                      Archaea                                                \n      4: 1935183                 Asgard group                                                \n      5: 1936272 Candidatus Heimdallarchaeota                                                \n     ---                                                                                     \n2281047:    2413               Transposon Tn7                                                \n2281048:    2417               Transposon Tn9                                                \n2281049:    2414             Transposon Tn903                                                \n2281050:    2415             Transposon Tn916                                                \n2281051:    2416             Transposon Tn917                                                \n         superkingdom\n      1:             \n      2:             \n      3:             \n      4:      Archaea\n      5:      Archaea\n     ---             \n2281047:             \n2281048:             \n2281049:             \n2281050:             \n2281051:   \n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fzachcp%2Fflattax","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fzachcp%2Fflattax","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fzachcp%2Fflattax/lists"}