{"id":13735949,"url":"https://github.com/zachcp/msaR","last_synced_at":"2025-05-08T12:31:33.245Z","repository":{"id":46878944,"uuid":"71503760","full_name":"zachcp/msaR","owner":"zachcp","description":"The BioJS MSA viewer wrapped into an R package","archived":false,"fork":true,"pushed_at":"2021-09-22T02:14:13.000Z","size":859,"stargazers_count":8,"open_issues_count":3,"forks_count":8,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-05-06T07:04:38.032Z","etag":null,"topics":["alignment","htmlwidgets","multiple","r","sequence"],"latest_commit_sha":null,"homepage":"https://zachcp.github.io/msaR/","language":"JavaScript","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":"benediktrauscher/msaR","license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/zachcp.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2016-10-20T20:56:01.000Z","updated_at":"2023-05-03T20:03:08.000Z","dependencies_parsed_at":null,"dependency_job_id":null,"html_url":"https://github.com/zachcp/msaR","commit_stats":null,"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zachcp%2FmsaR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zachcp%2FmsaR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zachcp%2FmsaR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zachcp%2FmsaR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/zachcp","download_url":"https://codeload.github.com/zachcp/msaR/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":253068547,"owners_count":21848825,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["alignment","htmlwidgets","multiple","r","sequence"],"created_at":"2024-08-03T03:01:13.300Z","updated_at":"2025-05-08T12:31:32.927Z","avatar_url":"https://github.com/zachcp.png","language":"JavaScript","funding_links":[],"categories":["MSA","Visualization"],"sub_categories":["Biological Data"],"readme":"\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\n\n# msaR\n\n[![CRAN\\_Status\\_Badge](http://www.r-pkg.org/badges/version/msaR)](https://cran.r-project.org/package=msaR)\n\nmsaR is a an [htmlwidgets](https://github.com/ramnathv/htmlwidgets)\nwrapper of the [BioJS MSA viewer](https://github.com/wilzbach/msa)\njavascript library. msa will pass alignments to the BioJS MSA.\n\n## Installation\n\nYou can install msaR from CRAN or github:\n\n``` r\n# CRAN\ninstall.packages(\"msaR\")\n#github\ndevtools::install_github(\"zachcp/msaR\")\n```\n\n## Example\n\nThis is a basic example which shows you how to solve a common problem:\n\n``` r\nlibrary(msaR)\n\n# read some sequences from a multiple sequence alignment file and display\nseqfile \u003c- system.file(\"sequences\",\"AHBA.aln\", package=\"msaR\")\nmsaR(seqfile, seqlogo = T)\n```\n\n![](man/figures/msaR_screenshot.png)\n\nAll contributions are welcome! Please feel free to submit a pull\nrequest.\n\n### Support and Suggestions\n\nIf you have any problem or suggestion please open an issue\n[here](https://github.com/zachcp/msaR/issues)\n\n### License\n\nThis project is licensed under the [Boost Software License\n1.0](https://github.com/wilzbach/msa/blob/master/LICENSE).\n\n\u003e Permission is hereby granted, free of charge, to any person or\n\u003e organization obtaining a copy of the software and accompanying\n\u003e documentation covered by this license (the “Software”) to use,\n\u003e reproduce, display, distribute, execute, and transmit the Software,\n\u003e and to prepare derivative works of the Software, and to permit\n\u003e third-parties to whom the Software is furnished to do so, all subject\n\u003e to the following:\n\nIf you use the MSAViewer on your website, it solely requires you to link\nto us\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fzachcp%2FmsaR","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fzachcp%2FmsaR","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fzachcp%2FmsaR/lists"}