{"id":19903453,"url":"https://github.com/zdavatz/aips2sqlite","last_synced_at":"2025-05-03T00:31:10.192Z","repository":{"id":66323541,"uuid":"13469312","full_name":"zdavatz/aips2sqlite","owner":"zdavatz","description":"aips2sqlite - create an SQLite DB from AIPS, Swissmedic, BAG and Refdata","archived":false,"fork":false,"pushed_at":"2024-04-20T13:20:25.000Z","size":313031,"stargazers_count":6,"open_issues_count":3,"forks_count":5,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-04-07T08:51:28.814Z","etag":null,"topics":["aips","aips2sqlite","bag","java","refdata","sqlite","swissmedic"],"latest_commit_sha":null,"homepage":null,"language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/zdavatz.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2013-10-10T11:22:35.000Z","updated_at":"2024-08-24T02:02:31.000Z","dependencies_parsed_at":"2024-11-12T20:36:11.936Z","dependency_job_id":null,"html_url":"https://github.com/zdavatz/aips2sqlite","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zdavatz%2Faips2sqlite","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zdavatz%2Faips2sqlite/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zdavatz%2Faips2sqlite/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zdavatz%2Faips2sqlite/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/zdavatz","download_url":"https://codeload.github.com/zdavatz/aips2sqlite/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":252126442,"owners_count":21698963,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["aips","aips2sqlite","bag","java","refdata","sqlite","swissmedic"],"created_at":"2024-11-12T20:23:50.678Z","updated_at":"2025-05-03T00:31:05.184Z","avatar_url":"https://github.com/zdavatz.png","language":"Java","readme":"aips2sqlite\n===========\n\n[![Join the chat at https://gitter.im/zdavatz/aips2sqlite](https://badges.gitter.im/Join%20Chat.svg)](https://gitter.im/zdavatz/aips2sqlite?utm_source=badge\u0026utm_medium=badge\u0026utm_campaign=pr-badge\u0026utm_content=badge)\n\naips2sqlite - creates an SQLite DB from AIPS, Swissmedic, BAG and Refdata\n\n## Requirements\n\njava version \"1.8.0_92\" (tested on Windows, Linux, Mac OS X)\n\n## Build aips2sqlite.jar from commandline\n\n`make aips2sqlite`\n\nthe output will be placed here: `build/libs`\n\n## Clean the build folder\n\n`make clean`\n\n## Caveats\n\nOn some systems it may be necessary to increase the heap space with the Java option -Xmx, see below for an example.\n\n## Options\n\n```\n--alpha=\u003cchar\u003e    generate sqlite database or xml file for meds whose title starts with 'char'\n--help            print help\n--indications     generate report about keywords found in section indications (folder output)\n--inter\t\t\t  generate drug interaction files as an sqlite database and a csv data file\n--lang=\u003carg\u003e      generate database with given language, two options are supported: 'de' and 'fr'\n--nodown          do not download the aips, swissmedic, bag and refdata files\n--owner=\u003cowner\u003e   generate sqlite database or xml file for meds whose holder starts with 'owner'\n--pinfo           generate Patinfo (default is Fachinfo)\n--quiet           be extra quiet\n--regnr=\u003cnumber\u003e  generate sqlite database or xml file for meds whose registration number starts with 'number'\n--reports         generate parse and owner error reports (folder output)\n--verbose         be extra verbose\n--version         print the version information and exit\n--xml             generate xml file \n--zip             generate zipped versions sqlite database or xml file \n```\n\n## Examples\n\nGenerate German SQLite database including report file:\n\n$ java -jar aips2sqlite.jar --lang=de --verbose --reports\n\nGenerate French SQLite database, do not download any files and be extra quiet:\n\n$ java -jar aips2sqlite.jar --lang=fr --quiet --nodown\n\nGenerate zipped German database for all med titles starting with P including a parse and section indication reports:\n\n$ java -jar aips2sqlite.jar --lang=de --alpha=P --verbose --reports --nodown --indications --zip\n\nGenerate zipped French database and xml file for meds with registration number starting with N\n\n$ java -jar aips2sqlite.jar --lang=fr --xml --regnr=N --verbose --nodown --zip\n\nTo increase the heap space use the option -Xmx\n\n$ java -jar -Xmx2048m aips2sqlite.jar --lang=de --verbose --reports\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fzdavatz%2Faips2sqlite","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fzdavatz%2Faips2sqlite","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fzdavatz%2Faips2sqlite/lists"}