{"id":13711703,"url":"https://omarwagih.github.io/ggseqlogo/","last_synced_at":"2025-05-06T21:32:10.544Z","repository":{"id":44994392,"uuid":"82418232","full_name":"omarwagih/ggseqlogo","owner":"omarwagih","description":"Publication-quality sequence logos in R","archived":false,"fork":false,"pushed_at":"2024-10-13T15:48:53.000Z","size":11337,"stargazers_count":202,"open_issues_count":24,"forks_count":30,"subscribers_count":13,"default_branch":"master","last_synced_at":"2024-10-28T16:59:59.811Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/omarwagih.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2017-02-18T21:49:26.000Z","updated_at":"2024-10-13T15:48:57.000Z","dependencies_parsed_at":"2022-09-22T15:42:37.415Z","dependency_job_id":"7411cdb9-90de-4917-b853-e91dfeac0cf9","html_url":"https://github.com/omarwagih/ggseqlogo","commit_stats":{"total_commits":33,"total_committers":1,"mean_commits":33.0,"dds":0.0,"last_synced_commit":"4adc8f298d16f7495dc2bf8abf52bbfebcc9afcc"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/omarwagih%2Fggseqlogo","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/omarwagih%2Fggseqlogo/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/omarwagih%2Fggseqlogo/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/omarwagih%2Fggseqlogo/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/omarwagih","download_url":"https://codeload.github.com/omarwagih/ggseqlogo/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":224535422,"owners_count":17327528,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-08-02T23:01:10.833Z","updated_at":"2024-11-13T22:30:34.492Z","avatar_url":"https://github.com/omarwagih.png","language":"R","funding_links":[],"categories":["Plot layers","Icons, patterns and images"],"sub_categories":[],"readme":"\u003cimg src=\"https://cdn.rawgit.com/omarwagih/ggseqlogo/4938177a/inst/images/logo.svg\" alt=\"ggseqlogo logo\" width=\"350px\"\u003e\u003cbr\u003e\n[![](http://cranlogs.r-pkg.org/badges/ggseqlogo)](http://cran.rstudio.com/web/packages/ggseqlogo/index.html)\n[![](https://www.r-pkg.org/badges/version/ggseqlogo)](http://cran.rstudio.com/web/packages/ggseqlogo/index.html)\n\t\n\nggseqlogo is an R package for generating publication-ready sequence logos using ggplot2. \n\n## Getting started\nFirst install `ggseqlogo` from github using the `devtools` package:\n\n```r\ndevtools::install_github(\"omarwagih/ggseqlogo\")\n```\n\nLoad up the package and sample data\n\n```r\n# Load the required packages\nrequire(ggplot2)\nrequire(ggseqlogo)\n\n# Some sample data\ndata(ggseqlogo_sample)\n\n```\n\nThen draw a sequence logo\n\n```r\n# Plot DNA sequence logo for transcription factor - data from JASPAR\nggseqlogo( seqs_dna$MA0001.1 )\n\n# Plot protein sequence logo for kinase target phosphosites\nggseqlogo( seqs_aa$AKT1 )\n```\n\nFor more examples, and a list of features **[see the full tutorial here](http://omarwagih.github.io/ggseqlogo/)**.\n\n\n## Tutorial\nA detailed tutorial on how to use ggseqlogo **[can be found here](http://omarwagih.github.io/ggseqlogo/)**.\n\n## Citation\nIf you use ggseqlogo, please cite:\n\nWagih, Omar. ggseqlogo: a versatile R package for drawing sequence logos. _Bioinformatics_ 33, no. 22 (2017): 3645-3647.\n[https://doi.org/10.1093/bioinformatics/btx469](https://doi.org/10.1093/bioinformatics/btx469) PMID: [29036507](https://www.ncbi.nlm.nih.gov/pubmed/29036507)\n\n## Feedback\nIf you have any feedback or suggestions, drop me a line at (omarwagih(at)gmail.com) or open an issue on github.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/omarwagih.github.io%2Fggseqlogo%2F","html_url":"https://awesome.ecosyste.ms/projects/omarwagih.github.io%2Fggseqlogo%2F","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/omarwagih.github.io%2Fggseqlogo%2F/lists"}