Ecosyste.ms: Awesome

An open API service indexing awesome lists of open source software.

awesome-chemical-data

Curated list of known efforts in collecting and/or curating of chemical/materials data
https://github.com/neo-chem/awesome-chemical-data

  • ELN comparison grid
  • ELN guidance
  • Comparison of ELNs
  • List of ELNs
  • c6h6 - eln-docker?style=social)](https://github.com/cheminfo/roc-eln-docker) ![GitHub last commit](https://img.shields.io/github/last-commit/cheminfo/roc-eln-docker?style=social) [๐Ÿ“„](https://onlinelibrary.wiley.com/doi/abs/10.1002/mrc.4669).
  • chemotion ELN - commit/ComPlat/chemotion_ELN?style=social) [๐Ÿ“„](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5612905/pdf/13321_2017_Article_240.pdf)
  • openBIS
  • LabTrove
  • bluesky - commit/bluesky/bluesky?style=social). [๐Ÿ“„](https://www.tandfonline.com/doi/full/10.1080/08940886.2019.1608121).
  • Materials Data Curation System (MDCS) - selected templates. Developed at NIST. [![Github Stars](https://img.shields.io/github/stars/usnistgov/MDCS?style=social)](https://github.com/usnistgov/MDCS) ![GitHub last commit](https://img.shields.io/github/last-commit/usnistgov/MDCS?style=social)
  • eLabFTW - commit/elabftw/elabftw?style=social)
  • chemotion repository
  • Materials Commons - commons/materialscommons.org?style=social)](https://github.com/materials-commons/materialscommons.org). ![GitHub last commit](https://img.shields.io/github/last-commit/materials-commons/materialscommons.org?style=social) [๐Ÿ“„](https://link.springer.com/article/10.1007%2Fs11837-016-1998-7)
  • nmrshiftdb2
  • Pachl, C.; Frank, N.; Breitbart, J.; Brรคse, S. Overview of Chemical Ontologies. arXiv:2002.03842 [cs
  • SciData - commit/stuchalk/scidata?style=social)
  • BFO - level ontology "designed for use in supporting information retrieval, analysis and integration in scientific and other domains", under development since 2002 (last release 2019). [![Github Stars](https://img.shields.io/github/stars/BFO-ontology/BFO?style=social)](https://github.com/BFO-ontology/BFO) ![GitHub last commit](https://img.shields.io/github/last-commit/BFO-ontology/BFO?style=social)
  • oreChem
  • elnItemManifest - 2946-5-52#Sec3). ๐Ÿ˜ด
  • autoprotocol - python?style=social)](https://github.com/autoprotocol/autoprotocol-python) ![GitHub last commit](https://img.shields.io/github/last-commit/autoprotocol/autoprotocol-python?style=social)
  • Chemical Markup Language (CML) - Rust and Henry Rzepa. [๐Ÿ“„](https://dx.doi.org/10.1186/1758-2946-3-44) ๐Ÿ˜ด ([Last Update: 2013-04-22](https://sourceforge.net/projects/cml/))
  • European Materials and Modelling Ontology (EMMO) - repo](https://github.com/emmo-repo/) organisation on GitHub. [![Github Stars](https://img.shields.io/github/stars/emmo-repo/EMMO?style=social)](https://github.com/emmo-repo/EMMO) ![GitHub last commit](https://img.shields.io/github/last-commit/emmo-repo/EMMO?style=social)
  • Materials Genome Initiative JSON - schema) which aims to extend schema.org for materials science. [![Github Stars](https://img.shields.io/github/stars/usnistgov/mgi-json-schema?style=social)](https://github.com/usnistgov/mgi-json-schema) ![GitHub last commit](https://img.shields.io/github/last-commit/usnistgov/mgi-json-schema?style=social)
  • ChemAxiom - Rust.
  • ![Github Stars - commit/scimantica/chemaxiomchemdomain?style=social) ๐Ÿ˜ด
  • Chemical Information Ontology - commit/egonw/semanticchemistry?style=social) [๐Ÿ“„](https://doi.org/10.1371/journal.pone.0025513).
  • Chemical Methods Ontology - ontologies/rsc-cmo?style=social)](https://github.com/rsc-ontologies/rsc-cmo) ![GitHub last commit](https://img.shields.io/github/last-commit/rsc-ontologies/rsc-cmo?style=social)
  • Chemical Analysis Metadata Platform
  • Analytical Information Markup Language (AnIML)
  • RXNO: reaction ontologies - ontologies/rxno?style=social)](https://github.com/rsc-ontologies/rxno) ![GitHub last commit](https://img.shields.io/github/last-commit/rsc-ontologies/rxno?style=social)
  • Molecular process ontology (MOP)
  • ord-schema - Reaction-Database/ord-schema?style=social)](https://github.com/Open-Reaction-Database/ord-schema) ![GitHub last commit](https://img.shields.io/github/last-commit/Open-Reaction-Database/ord-schema?style=social)
  • ISA framework - tools/isa-api?style=social)](https://github.com/ISA-tools/isa-api) ![GitHub last commit](https://img.shields.io/github/last-commit/ISA-tools/isa-api?style=social) [๐Ÿ“„](https://www.nature.com/articles/ng.1054)
  • SD2E/opil - generated experimental requests and lab-automated protocol. [![Github Stars](https://img.shields.io/github/stars/SD2E/opil?style=social)](https://github.com/Open-Reaction-Database/ord-schema) ![GitHub last commit](https://img.shields.io/github/last-commit/SD2E/opil?style=social)
  • MatML
  • Physical information file (PIF) - commit/CitrineInformatics/pypif?style=social)
  • NMReDATA - commit/NMReDATAInitiative/javatools?style=social)
  • JCAMP-DX
  • nmrML - up language for NMR raw and spectral data. [![Github Stars](https://img.shields.io/github/stars/nmrML/nmrML?style=social)](https://github.com/nmrML/nmrML) ![GitHub last commit](https://img.shields.io/github/last-commit/nmrML/nmrML?style=social) [๐Ÿ“„](https://pubs.acs.org/doi/10.1021/acs.analchem.7b02795).
  • CMLSpect - 04-22](https://sourceforge.net/projects/cml/)).
  • NFDI4Chem
  • Blue Obelisk - 2946-3-37)
  • GO FAIR Chemistry Implementation Network
  • Chemistry Research Data IG
  • RDA/CODATA Materials Data, Infrastructure & Interoperability IG
  • Awesome Materials Informatics - lab/awesome-materials-informatics) focuses more on computational materials science.
  • FAIRsharing.org