Ecosyste.ms: Awesome

An open API service indexing awesome lists of open source software.

awesome-fair

A curated list of awesome stuff around the FAIR principles for (scientific) data, i.e that data is findable, accessable, interoperable and re-usable.
https://github.com/Materials-Data-Science-and-Informatics/awesome-fair

  • Barend Mons article in Nature 578, 491 (2020) - Proposition to invest 5% of research funds in ensuring data are reusable.
  • Cost of not having FAIR research data - A 2018 European Commission Cost-benefit analysis for FAIR research data (Written by PwC EU Services).
  • The FAIR Guiding Principles for scientific data management and stewardship - This Comment in [Sci Data](https://www.nature.com/sdata/) is the first formal publication of the FAIR Principles (2016).
  • GO FAIR Zotero Library - Nice collection of publications around the FAIR principles.
  • DataPLANT ARC Tool Talk - NFDI4plants interpretation of the FDO based on GitHub repository and RO Crate.
  • DONA Suggested Reading - The history of the Digital Object Architecture (DOA) back into the 80s.
  • FAIR Digital Objects Forum - General platform for discussions on the advancement and development of FAIR Digital Objects.
  • FAIR Digital Object Framework - A WIP specification for an FDO infrastructure based on linked data / RDF.
  • FAIR DO publications - Relevant publications (concept papers and specs) by RDA working groups on FDOs.
  • RO Crate - Pragmatic approach combining existing technologies and ontologies into a metadata standard for annotating scientific. datasets.
  • PID services registry - A searchable registry for PID services.
  • FAIR Evaluation Services - A FAIR assessment tool from FAIRsharing, [code](https://github.com/FAIRMetrics/Metrics).
  • F-uji - An (online) tool which can provide a FAIR score for a given PID based on a metric created by FAIRsFAIR, [code](https://github.com/pangaea-data-publisher/fuji).
  • EuDat - Collaborative European data infrastructure.
  • FAIRsharing - A curated resource on data and metadata standards, inter-related to databases and data policies.
  • Research Data Alliance - International organization and communication platform for establishing standards and recommendations concerning research data publication.
  • The Turing Way - Handbook and community for reproducible, ethical and collaborative data science.
  • DataCite - Metadata schema developed by international community with increasing adoption by repositories
  • Data Catalog (DCAT) - RDF vocabulary designed to facilitate interoperability between data catalogs published on the Web.
  • Dublin Core Metadata Initiative Terms - Dublin Core Metadata Element Set, is a set of fifteen "core" elements for describing resources.
  • JSON LD Playground - Convert JSON-LD data between various representations.
  • JSON Schema - Standard for the description of structural constraints in order to do validation of JSON objects.
  • Provenance Primer (PROV) - This primer document provides an accessible introduction to the PROV data model for provenance interchange on the Web.
  • Resource Description Framework (RDF) - RDF is a standard model for data interchange on the Web.
  • Schema.org - Well-established and industry-accepted vocabulary providing semantics for common entities like Person, Organization, Dataset, etc.
  • SKOS - The Simple Knowledge Organization System (SKOS) is a common data model for sharing and linking knowledge organization systems via the Semantic Web.
  • Ontobee - A linked ontology data server to support ontology term dereferencing, linkage, query and integration.
  • publication
  • Ontology Lookup Service - OLS is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions.
  • awesome-ontology - A curated list of ontology things.
  • awesome-semantic-tools - List of projects related to Ontology engineering and Semantic Web technologies.
  • Datacite commons - Search through the metadata indexed by Datacite.
  • EuDat B2find - Search through metadata of datasets accumulated by EuDat.
  • Microsoft academy - Mircosoft academy search through a pid graph created by microsoft (shutdown end of 2021).
  • OpenAIRE explorer - Search through the metadata indexed by openaire.
  • Schole explorer - A data literature interlinking service (former scholix), indexes links between data and journal publications. It also provides interfaces and APIs to query the graph.
  • Research Software Repository - Aggregates research software from various sources with information about the problem it solves and its scientific domain.
  • CITATION.CFF - Plain text files with human- and machine-readable citation information for software (and datasets). Supported by GitHub, Zenodo, Zotero.
  • Citable code with Zenodo & GitHub - Make GitHub repositories citable with Zenodo DOI.
  • CodeMeta - CodeMeta works on providing a minimal metadata schema for science software and code, in JSON and XML to create a concept vocabulary that can be used to standardize the exchange of software metadata across repositories and organizations.
  • fossology - FOSSology is an open source license compliance software system and toolkit. You can run license, copyright and export control scans from the command line.
  • HERMES - A CI based workflow to create and publish software publications to well known repositories.
  • SOMEF - Extract software publication metadata from README and other docs automatically using ML and other techniques to reduce the amount of boilerplate work for the developer.
  • awesome-research-software-registies - Awesome list for where one can register or upload research software.
  • awesome-rse - An awesome list by HIFIS collecting information about research software engineering, touching FAIRness and sustainability
  • AiiDA - Automated Interactive Infrastructure and Database for Computational Science (AiiDA) to automatically track provenance of simulation workflows and all associated data, [code](https://github.com/aiidateam/aiida-core).
  • DataLad - A free and open-source distributed data management system for everyone. It is based on git-annex with manual to automatic provenance tracking, [code](https://github.com/datalad/datalad).
  • MLflow - Tool to track the provenance of machine learning applications, [code](https://github.com/mlflow/mlflow/).
  • CWL - Domain-agnostic and community-driven open standard for description and execution of research workflows that supports provenance tracking ([CWLProv](https://github.com/common-workflow-language/cwltool/blob/main/CWLProv.rst)) in a standard-compliant way using the existing RO Crate, PROV and BagIt standards.
  • PROV-O Primer - An introduction to the data model of [Provenance Ontlogy (PROV-O)](https://www.w3.org/TR/2013/REC-prov-o-20130430/)
  • awesome-pipeline - A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin.
  • Awesome workflow engines - Curated list of awesome open source workflow engines.
  • Computational Data Analysis Workflow Systems - A list of existing workflow systems.
  • Dataverse - Open source research data repository software [code](https://github.com/IQSS/dataverse).
  • EuDat B2share - A repository by EuDat, but the software is open sourc, bases in invenio and one can setup own instances of it, [code](https://github.com/EUDAT-B2SHARE/b2share).
  • Invenio - Open source customizable software to setup large scale digital repositories, library systems and data repositories, [code](https://github.com/inveniosoftware/invenio).
  • InvenioRDM - The turn-key research data management repository based on Invenio framework and Zenodo.
  • Microsoft academy graph - All the data and links from Mircosoft academy (shutdown end of 2021).
  • Openaire graph - All metadata contained in the openaire graph.
  • Scholix - A schema for scholarly links. Implemented and deployed by several scholarly link providers.
  • CrossRef - Organization building connections between related entities, building a queryable graph.
  • awesome-rse - An awesome list by HIFIS collecting information about research software engineering, touching FAIRness and sustainability
  • awesome-rse-policies - An awesome list by HIFIS collecting information about research software engineering policies, touching FAIRness and sustainability
  • Awesome-open-climate-science - An open science related list specific to the domain of Atmospheric, Ocean, and Climate science.
  • Awesome-open-science-software - A list of open science resources and software.
  • Awesome Curated Tools - A curated list of digital tools we use, ranging from accounting and data science to scientific research and liquid democracy.
Programming Languages
Jupyter Notebook 1 Python 1 PHP 1 HTML 1
Keywords
awesome-list 6 awesome 4 tools 2 hifis 2 semantic-web 2 research-software 2 research-software-engineering 2 research-software-engineers 2 rse 2 rdf 2 ontology 2 fossology 1 compliance-check 1 license 1 compliance-automation 1 compliance 1 license-checking 1 sparql 1 owl2 1 owl 1 metadata 1 linked-data 1 knowledge-graph 1 curated-list 1 reproducible-research 1 reproducible-experiments 1 open-science 1 computational-science 1 policy 1 guidelines 1 workflow 1 software-metadata 1 software-citation 1 publications 1 fair4rs 1 spdx-licenses 1 spdx 1 oss 1 license-scan 1 license-management 1 knowledge-base 1