Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
awesome-biomechanics
A curated, public list of resources for biomechanics and human motion analysis: datasets, processing tools, software for simulation, educational videos, lectures, etc.
https://github.com/modenaxe/awesome-biomechanics
- Lectures on animal locomotion
- Lectures on multibody dynamics
- KNES 789W - Advanced Projects in Kinesiology; Modeling & Simulation of Human Movement
- Mathematical Tools for Neuroscience (Neurobio 212 at Harvard)
- Mechanical Systems Design - level course that develops experience and confidence with: 1. An approach to mechanical systems design that incorporates ideation, back-of-the-envelope analysis, computational analysis, and prototyping, iteratively and with an appropriate balance for the domain. 2. Designing custom mechanical components, finding and selecting common machine elements, and selecting electric motors and transmission elements to meet performance, efficiency and reliability goals. A Twitter describing the materials is available [here](https://twitter.com/StevenHCollins/status/1401204277373067266).
- Neuromechanics course material
- Graduate Level Statistics Course with Biomedical Engineering Examples
- Neuromatch Academy
- Robotics 101: Computational Linear Algebra
- Quantitative methods in biomedical sciences - level class designed for PhD students and others who wish to develop skills relating to data analysis and interpretation, including data handling, plotting, statistics, and image analysis. The course uses MATLAB and materials are available on [GitHub](https://github.com/Campbell-Muscle-Lab/teaching_PGY630_QM).
- Sport Biomechanics Lecture Series - Naylor. Includes introductory topics like presentations of motion capture techniques by Vicon ([lecture 1](https://www.youtube.com/watch?v=1zJ14cW-JqY) and [lecture 2](https://www.youtube.com/watch?v=hM7xEoyP-4o)) and an [introduction](https://www.youtube.com/watch?v=2xgyTpsa14M#) of electromyography (EMG) by Delsys.
- BPK 409: Wearable Technology and Human Physiology - of-the-art wearable technology to measure, analyze, and understand human physiological systems including muscular, nervous, and cardiovascular systems.</br>
- description of labs
- code
- Introduction to Reinforcement Learning with David Silver
- Statistical shape modelling
- AnyBody Technology Videos and Webcasts
- American Society Biomechanics (ASB)
- BassettBiomechanics
- Biomch-V
- Dynamic Walking
- European Society of Biomechanics (ESB)
- International Society of Biomechanics (tutorials and lectures)
- International Society of Biomechanics in Sports (ISBS)
- Journal of Foot and Ankle Research
- OpenSim Videos and Webinars
- UCalgary Human Performance Lab
- Manoj Srinivasan's channel
- Ross Miller's channel
- Stuart McErlain-Naylor channel
- Analysis of upright posture by force platform
- CNB-ASB Muscle Workshop
- A critique of Induced Acceleration Analysis
- Biomechanics playlist
- F8 2019 - VR Full Body Tracking & Avatars - f8-2019-body-tracking/)
- Running with bone pins
- Introduction to Trajectory Optimization
- A free/opensource workflow from CT scan to FEA - source software (Dragonfly for segmentation, Blender for mesh refinement and FEBio for finite element analysis. Quick overview of the main steps.<br/>
- Python website
- Scipy Lecture Notes
- Scientific Python Lectures
- Python for Everybody - chuck.com/pythonlearn/EN_us/pythonlearn.pdf).
- Python Programming And Numerical Methods: A Guide For Engineers And Scientists
- Google Python Style Guide
- Python testing style guide
- Matplotlib cheatsheet
- Notes on Scientific Computing for Biomechanics and Motor Control
- Biomechanical Analysis using Python and Kinetics Toolkit
- Julia Language website
- Julia Academy
- Version Control for Researchers - alcantara.com). Tutorial for ASB2020 introducing GitHub and version control for biomechanists. Accompanying tutorial material located at the [ASB_Tutorial repository](https://github.com/alcantarar/asb_tutorial).
- Atlassian Git tutorial
- Anatomy Standard - based 3D model of the human body, create high-quality, interactive illustrations of the model, and share them here to provide a resource for teaching and explaining anatomy. Images are licensed under the [Creative Commons Attribution-NonCommercial 4.0 International License](https://creativecommons.org/licenses/by-nc/4.0/). </br>
- Anybodyrun - body models of running based on principal components analysis. The approach behind the application is described on John Rasmussen's [blog](https://biomechanicsforeverybody.wordpress.com/).
- Bayesian Data Analysis course
- code
- book
- Biomch-L discussions - L database:
- Joint Attitude Debate Summary
- 3D Joint Power Debate Summaary
- Engineers Code
- Graphical User Interfaces (GUI) for Research - for-RS). Recording of the lessons are available on [Youtube](https://www.youtube.com/channel/UCBnJTebN2rVnfmiXqUfsvtA).
- How to get meaningful and correct results from your finite element model
- Julia notebooks on dynamic systems
- Muscle Atlas - atlas).
- ASB Teaching Repository
- Biomechanics Toolbar
- Biomechanics of Movement Classroom - movement). </br>
- Biomechanics of Movement
- Scientific Animation of Muscle Contraction
- Scientific Animation of Human Locomotion
- Kwon3d website
- GitHub resources for teaching
- How to review a paper
- How to write a systematic review for Health
- A roadmap for searching literature in PubMed
- Interactive Simulations for Science and Math
- Kuo's course homeworks
- Manim: Mathematical Animation Engine
- MoLib (Motion Library) - to-use-motion-library/) by Markus Kurz.
- Trajectory Optimization Toolbox
- Notes on Scientific Computing for Biomechanics and Motor Control
- Optimal Control Workshop - funded Optimal Control Workshop held on July 9, 2015 at the University of Edinburgh as part of the XV International Symposium on Computer Simulation in Biomechanics.
- OpenSim teaching Hub
- ODE Integration Best Practices With Octave/Matlab
- Seeing theory
- Teaching and Learning with Jupyter
- Tips for setting up remote lessons
- Tutorial: 3D Kinematics and Inverse Dynamics MATLAB scripts
- Tutorial: Musculoskeletal Model for Simulation of Walking
- Tutorial: Kane’s Method for an inverted pendulum
- Jumping model (5 dof)
- Jumping model with foot (6 dof)
- Sit-to-stand model
- Elbow model in Matlab
- *VIRTUAL LAB: Australopithecus afarensis KNEE JOINT* - Madison).
- *VIRTUAL LABS IN BIOLOGICAL ANTHROPOLOGY* - Madison).
- Understanding p-values Through Simulations: An Interactive Visualization - values through an interactive simulations.
- Python Tutor - Visualize code execution
- Biomechanics and Motor Control of Human Movement (4th Edition)
- Calculus made Easy
- Computer-Aided Analysis of Mechanical Systems
- Computer Aided Kinematics And Dynamics Of Mechanical Systems
- Convex Optimization
- Dynamics: Theory and Applications
- Dynamics of Human Gait (2nd Edition)
- Experimental Methods in Biomechanics (link)
- Power Analysis with Superpower
- Reinforcement Learning: An Introduction
- The ABC of EMG
- The Feynman Lectures on Physics - 1963). Includes audio recordings.
- here
- paper
- dataset
- dataset in NIfTI format
- dataset segmented 2023
- website
- paper
- dataset
- website
- related website
- paper
- website
- how to cite
- :dvd: dataset | :computer: website
- :dvd: dataset | :computer: website
- paper
- dataset
- STL files
- paper
- website
- resources
- paper
- dataset
- website
- .
- **SPSS Statistics**
- paper
- code
- **JASP** - source low-cost alternative to commercial statistical software.
- **jamovi** - source statistical software platform based on R, making it accessible to users who are not familiar with R.
- **R**
- **RStudio** - highlighting editor, and tools for plotting and debugging.
- **Paraview**
- **Mayavi** - Python tool :snake:
- **OpenCmiss**
- website
- source
- website
- code
- website
- source
- website
- How-To
- **MicroDicom** - commercial use.
- website
- paper
- source
- paper
- ten-years-challenge
- paper
- paper
- RESCIENCE C website
- paper
- GitHub page
- paper
- website
- project wiki
- website
- blog-repro-pack-example
- slides
- website
- paper
- Docker
- Binder
- Colab
- instructions
- container including Mathworks dependencies (NO MATLAB)
- Choose a license
- CreativeCommons
- YouTube video
- slides
- paper
- examples
- list of documents
- Americal Society of Biomechanics
- European Society of Biomechanics
- International Society of Biomechanics
- 3-D Analysis of Human Movement
- Comparative Neuromuscular Biomechanics
- Footware Biomechanics Group
- Hand and Wrist Biomechanics International
- International Shoulder Group
- Motor Control Group
- Technical Group on Computer Simulation (TGCS)
- International Society of Biomechanics in Sports
- National Biomechanics Day
- ISB Data Resources
- Richard Baker's blog
- Stuart McErlain-Naylor's personal website
- Viswanath Sundar Sports Science Virtual Lab
- **Hugo**
- **Hugo academic themes**
- **Jekyll**
- **Minimal Mistakes**
- **Jekyll theme for academic pages**
- **Pelican**
- **Substack**
- **Weebly**
- **WiX**
- **Wordpress**
- Biomechanical Datasets
- Datasets of complex physiological signals
- GitHub Biomechnical repositories
- Open-Access Medical Image Repositories
- Data Sources from Stanford's Mobilize Center
- Image datasets from medical image analysis grand-challenges website
- **Mini tutorial on my OBS workflow for streaming and recording videos**
- internal report
- website
- paper
- source
- project introduction
- website
- website with links
- website
- source
- source
- source
- plugin files
- **VIRTUAL LAB: Australopithecus afarensis KNEE JOINT** - Madison).
- **VIRTUAL LABS IN BIOLOGICAL ANTHROPOLOGY** - Madison).
- Le Mouvement Humain
- dataset
- GitHub workflow
- Git - novice/) are a perfect place to start with Git and GitHub.
- "First Contributions"
- like this one
- 
Programming Languages
Keywords
biomechanics
16
python
9
kinematics
8
robotics
8
optimization
5
matlab
5
dynamics
4
optimal-control
4
simulation
4
opensim
3
geometry
3
segmentation
3
deep-learning
3
open-source
3
3d-models
3
kinetics
3
musculoskeletal-models
3
mocap
2
casadi
2
3d-slicer-extension
2
c3d
2
3d-reconstruction
2
muscle
2
mri
2
engineering
2
computational-biology
2
ros
2
image-processing
2
toolbox
2
code-generation
2
finite-element-analysis
2
motion-planning
2
conda
2
science
2
human-pose-estimation
2
jupyter-notebook
2
motor-control
2
scientific-computing
2
tutorials
2
3d-printing
2
dataset
2
machine-learning
2
mesh
2
visualization
2
stl
2
bipedal
2
dynamic
2
hybrid
2
virtual-constraints
2
medical-imaging
2