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awesome-biomolfold

RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding
https://github.com/aspirincode/awesome-biomolfold

Last synced: 7 minutes ago
JSON representation

Based on the classification of biomolecules
- peptideFold
  - Briefings in Bioinformatics (2021) - group.net/PSSP-MVIRT)
  - Briefings in Bioinformatics (2021) - group.net/PSSP-MVIRT)
  - Briefings in Bioinformatics (2021) - group.net/PSSP-MVIRT)
  - Structure 31.1 (2023)
- Antibody-Antigen ComplexFold
- ProteinFold
  - bioRxiv (2022)
  - bioRxiv (2022) - corp/Uni-Fold)
  - bioRxiv (2022)
  - Science 379.6637 (2023)
  - Nature 577, 706–710 (2020) - deepmind/deepmind-research/tree/master/alphafold_casp13)
  - Nature 596, 583–589 (2021) - deepmind/alphafold)
  - Science 373.6557 (2021)
  - Biorxiv (2022)
- DNA-Protein ComplexFold
  - Nature Methods 21.1 (2024) - ipd/RoseTTAFold2NA)
- Peptide-Protein ComplexFold
  - biorxiv (2021) - deepmind/alphafold)
- Protein-Protein ComplexFold
  - Nat Commun 13, 6028 (2022)
  - arXiv:2404.10260 (2024)
- RNAFold
  - arXiv:2002.05810 (2020)
  - Science 373.6558 (2021)
  - Nat Methods 19, 1234–1242 (2022)
  - bioRxiv (2024) - 0/RiboDiffusion)
  - bioRxiv (2024)
- RNA-Protein ComplexFold
  - code
- DNAFold
  - Nat. Mater. (2024) - SNU/DeepSNUPI)
Folding Tool Collection
- AlphaFold 2
- OpenFold
  - Nat Methods (2024)
- AlphaFold-Multimer
  - PLOS Computational Biology (2024)
- Folding-guide ligand discovery
  - Science (2024)

Programming Languages

Categories

Based on the classification of biomolecules 27 Folding Tool Collection 6

Sub Categories

ProteinFold 8 RNAFold 5 peptideFold 4 Antibody-Antigen ComplexFold 4 AlphaFold 2 3 Protein-Protein ComplexFold 2 DNA-Protein ComplexFold 1 Folding-guide ligand discovery 1 OpenFold 1 RNA-Protein ComplexFold 1 Peptide-Protein ComplexFold 1 AlphaFold-Multimer 1 DNAFold 1

Keywords

rna-structure 1 pytorch 1 protein-structure 1 alphafold2 1