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awesome-bids
A curated list of awesome BIDS projects, proposals, apps and resources
https://github.com/bids-standard/awesome-bids
Last synced: 6 days ago
JSON representation
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Converters
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MRI
- SAMRI
- BIDScoin - level (raw) neuroimaging data sets to BIDS without needing to code anything. It features automatic data discovery based on header as well as filesystem information, and comes with a user-friendly GUI to add missing information and tweak the results. BIDScoin supports multiple source data formats with plugins (e.g. employing dcm2niix, spec2nii or nibabel) and allows customization of the prior knowledge about your data (allowing for fully automatic CLI data conversion if you like).
- ](https://www.gnu.org/licenses/gpl-3.0)
- ](https://pypi.org/project/bidsify)[](https://hub.docker.com/r/lukassnoek/bidsify)
- bidskit
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- [](https://www.gnu.org/licenses/gpl-3.0)
- ](https://www.gnu.org/licenses/gpl-3.0)
- Clinica
- ](https://opensource.org/licenses/MIT)
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- ](https://www.gnu.org/licenses/gpl-3.0)
- Explore ASL - BIDS format.
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- ](https://www.gnu.org/licenses/gpl-3.0)
- ](https://hub.docker.com/r/mercureimaging/mercure-dcm2bids)[](https://www.gnu.org/licenses/gpl-3.0)
- ](https://www.gnu.org/licenses/gpl-3.0)
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- ReproIn - based turnkey solution: a setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners.
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- Autobids
- bidsify - compatible datasets.
- BMAT
- BrkRaw
- dac2bids
- Data2Bids
- Dcm2Bids
- Horos (Osirix) export plugin
- mercure-dcm2bids - source DICOM orchestration platform that can integrate containerized apps into clinical workflows. It has a graphical user interface making it easy to setup and manage BIDS configurations for multiple protocols. The Dcm2Bids tool is used for conversion.
- niix2bids
- OpenfMRI2BIDS
- PET2BIDS
- XNAT2BIDS - compatible output (nii+json).
- - commit/kamillipi/2bids?style=plastic)](https://github.com/kamillipi/2bids)
- ](https://pypi.org/project/bidscoin)[](https://www.gnu.org/licenses/gpl-3.0)
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MEEG
- ](https://opensource.org/licenses/MIT)
- EEGLAB - MATLAB-tools'>See plugins</a>
- ](https://www.gnu.org/licenses/gpl-3.0)
- MNE-BIDS - BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.
- sovabids
- ](https://www.gnu.org/licenses/gpl-2.0)
- Biscuit
- - commit/aces/EEG2BIDS?style=plastic)](https://github.com/aces/EEG2BIDS)
- BIDSme
- FieldTrip - data2bids
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physiological
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others
- ](https://opensource.org/licenses/MIT)
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- convert-eprime - Prime files to CSVs. Not currently being developed.
- DCM2NIIx
- DICM2NII
- sim2bids
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BIDS Extension Proposals (BEP)
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raw
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others
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derivative
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BIDS Apps
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others
- ](https://pypi.org/project/BIDS-pydantic/)
- ](https://pypi.org/project/hedtools/)
- Lead-DBS
- mne-bids
- neurobagel annotate
- neurobagel query - demographic and imaging parameters.
- nipopy
- ](https://pypi.org/project/pybids/)
- .
- bids2cite
- bidser
- BIDSHandler
- File mapper
- ](https://pypi.org/project/hedtools/)
- rbids
- psychopy-bids
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Code
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Publications
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derivative
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Validation
Programming Languages
Categories
Sub Categories
Keywords
bids
40
bidsapp
22
mri
17
neuroimaging
9
diffusion-mri
6
fmri
5
preprocessing
5
closember
4
bids-apps
4
python
3
data-standards
3
anatomical-mri
2
functional-mri
2
neuroscience
2
connectome
2
image-processing
2
quality-control
2
converter
2
eeg
2
validation
2
meg
2
pipelines
2
neuroimaging-data
2
docker-container
1
connectomics
1
dataset
1
mri-analysis
1
singularity-container
1
multivariate-pattern-analysis
1
mvpa
1
similarity-analysis
1
fmri-data-analysis
1
tutorials
1
nibabel
1
simpleitk
1
bids-format
1
organize-files
1
bids-converter
1
dataloader
1
json
1
metadata
1
magnetoencephalography
1
convert-eprime-files
1
eprime
1
psychology-experiments
1
computational-neuroscience
1
conversion
1
bidsap
1
bruker
1
standards
1