Data

Tools

Indexes

Applications

Experiments

Awesome

An open API service indexing awesome lists of open source software.

awesome

Awesome list for Computational Physiology
https://github.com/ComputationalPhysiology/awesome

Last synced: 4 days ago
JSON representation

  • Image processing

    • MeVisLab - a powerful, modular framework for image processing research and development with a special focus on medical imaging
    • VMTK - collection of libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis for image-based modeling of blood vessels

  • Mesh generation

    • Cleaver - A multimaterial tetrahedral meshing library and application

  • Optimization

    • pygmo - pygmo is a scientific Python library for massively parallel optimization based on pagmo.
    • pymo - Multiobjective optimization in python
    • NLopt - NLopt is a free/open-source library for nonlinear optimization,
    • Optizelle - An Open Source Software Library Designed To Solve General Purpose Nonlinear Optimization Problems

  • Simulation software

    • Cardiac mechanics

      • pulse - Cardiac mechanics simulator based on FEniCS

    • Electrophysiology

      • CBCBeat - an adjoint-enabled framework for computational cardiac electrophysiology
      • CARP
      • openCARP - open source version of CARP

    • Electromechanics

      • SciRun - Problem solving environment for modelling, simulation and visualization

    • Cellular modeling

      • Myokit - Python based software package designed to simplify the use of numerical models in the analysis of cardiac myocytes.

  • Model repositories

    • Cellular modeling

      • CellML - Cell models
      • BioModels - Repository of mathematical models of biological and biomedical systems.

  • Visualization

    • Cellular modeling

      • ImageVis3D - Volume rendering program
      • FluoRender - Interactive tool for multi-channel fluorescence microscopy data visualization and analysis
      • Map3D - Scientific visualization application to display and edit complex, three-dimensional geometric models and the scalar data associated with those models. The map3d interface provides interactive display of both geometry and data assigned to elements of that geometry
Categories
Simulation software 6 Optimization 4 Visualization 3 Image processing 2 Model repositories 2 Mesh generation 1
Sub Categories
Cellular modeling 6 Electrophysiology 3 Cardiac mechanics 1 Electromechanics 1