awesome-covid19-resources

Collection of awesome links about initiatives fighting COVID19 outbreak
https://github.com/defeatcovid19/awesome-covid19-resources

Last synced: 1 day ago
JSON representation

Datasets and models
- Epidemic data and models
  - Switzerland
  - WHO
  - Worldometer
  - Brazil
  - Canada
  - Mexico
  - United States
  - Isreal
  - Singapore
  - Australia
  - Austria
  - Belgium
  - Denmark
  - Estonia
  - Finland
  - France
  - Germany
  - Hungary
  - Ireland
  - Italy
  - Netherlands
  - Norway
  - Poland
  - Portugal
  - Spain
  - Canada - Case level dashboard about the COVID-19 outbreak in Canada, curated by [COVID-19 Canada Open Data Working Group](https://github.com/ishaberry/Covid19Canada)
  - Isreal - Government dashboard for monitoring the COVID-19 outbreak in Israel (in Hebrew)
  - Portugal - Official dashboard for monitoring the COVID-19 outbreak in Portugal, provided by the [Public Health Department](https://www.dgs.pt) of Portugal
  - Singapore - Unoffical but extremly extensive dashboard for monitoring the COVID-19 outbreak in Singapore at case-level, provided by [@zp_uca](https://twitter.com/zp_uca)
  - Spain - Official dashboard for monitoring the COVID-19 outbreak in Spain, provided by the [Instituto de Salud Carlos III](https://www.isciii.es)
  - Epidemic calculator - An interactive visual calculator demonstrating the relations between different epidemic variables.
  - COVID-19 Scenarios - A planning tool for COVID-19 outbreaks in communities across the world.
  - Sweden
  - New Zealand
  - Switzerland
  - Sweden
  - United Kingdom
  - New Zealand
- Medical imaging
  - Pneumonia related Kaggle Datasets - A collection of medical imaging (chest X-ray or CT) datasets and other resources.
  - Coronavirus disease 2019 (COVID-19)
  - NIH Clinical Center chest x-ray datasets - ray | 100,000+ | 14 categories including pneumonia | [http](https://nihcc.app.box.com/v/ChestXray-NIHCC); torrent: [full](https://academictorrents.com/details/557481faacd824c83fbf57dcf7b6da9383b3235a), [224x224](https://academictorrents.com/details/e615d3aebce373f1dc8bd9d11064da55bdadede0) |
  - BIMCV-COVID19 - PadChest](http://bimcv.cipf.es/bimcv-projects/padchest/) | [Medical Imaging Bank of the Valencia Region](http://bimcv.cipf.es) | Chest x-ray | 160,000+ | 174 labels (no COVID-19 yet) | [http](http://ceib.bioinfo.cipf.es/covid19/padchest_neumonia.zip); torrent: [full](https://academictorrents.com/details/dec12db21d57e158f78621f06dcbe78248d14850), [224x224](https://academictorrents.com/details/e0aeda79626589f31e8bf016660da801f5add88e) |
  - RSNA Pneumonia Detection Challenge - ray | 26,684 | pneumonia object detection bboxes | [kaggle](https://www.kaggle.com/c/10338/download-all) (DICOM), [torrent](https://academictorrents.com/details/95588a735c9ae4d123f3ca408e56570409bcf2a9) (jpeg) |
  - CheXpert - ray | 224,316 | 14 categories including pneumonia | [http](https://stanfordmlgroup.github.io/competitions/chexpert/) (registration needed) |
  - Open-i - ray | 7,470 | | http: [png](https://openi.nlm.nih.gov/imgs/collections/NLMCXR_png.tgz), [DICOM](https://openi.nlm.nih.gov/imgs/collections/NLMCXR_dcm.tgz), [labels](https://openi.nlm.nih.gov/imgs/collections/NLMCXR_reports.tgz) |
  - COVID19 High quality images - ray | 338 | COVID-19, Viral Pneumonia / Normal | [kaggle](https://www.kaggle.com/theroyakash/covid19/download) |
  - Chest X-Ray Images (Pneumonia) - ray | 5,863 | Pneumonia / Normal | [kaggle](https://www.kaggle.com/paultimothymooney/chest-xray-pneumonia/download) |
  - Detecting COVID-19 in X-ray images with Keras, TensorFlow, and Deep Learning
  - COVID-10 detection in X-ray images using deep learning and Grad-CAM visualisation - Derived work on the interpretability of the results.
  - Deep Learning for Medical Imaging: COVID-19 Detection - Ported the above model to MATLAB.
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - TorchXrayVision - ray datasets and models providing a standardized interface for some of the datasets listed below.
  - COVID-19 image data collection - ray / CT | 158 (updating)| COVID-19, SARS, Viral Pneumonia, etc. | [http](https://github.com/ieee8023/covid-chestxray-dataset/archive/master.zip) |
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Coronavirus disease 2019 (COVID-19)
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
  - Using Deep Learning to detect Pneumonia caused by NCOV-19 from X-Ray Images
Selected scientific articles
- Epidemic data and models
  - COVID-19 Open Research Dataset - A free resource of over 29,000 scholarly articles about COVID-19 and the coronavirus family of viruses
  - Call to action
- Medical imaging papers
  - Artificial Intelligence Distinguishes COVID-19 from Community Acquired Pneumonia on Chest CT
  - Lung Infection Quantification of COVID-19 in CT Images with Deep Learning
  - Rapid AI Development Cycle for the Coronavirus (COVID-19) Pandemic
  - Deep Learning System to Screen Coronavirus Disease 2019 Pneumonia
  - A deep learning algorithm using CT images to screen for Corona Virus Disease (COVID-19)
  - Coronavirus Disease 2019 (COVID-19): A Perspective from China - A study discussing the use of different diagnosis tools (CT, x-ray) for early detection of COVID-19
- Epidemic papers
- Clinical record analysis
  - Prediction of criticality in patients with severe Covid-19 infection using three clinical features - based prognostic model with clinical data in Wuhan
  - Abnormal respiratory patterns classifier may contribute to large-scale screening of people infected with COVID-19 in an accurate and unobtrusive manner
- Computational drug research
  - Repurposing Therapeutics for COVID-19 - Based Docking to the SARS-CoV-2 Viral Spike Protein and Viral Spike Protein-Human ACE2 Interface

Programming Languages

Jupyter Notebook 2

Categories

Datasets and models 89 Selected scientific articles 19 License 1

Sub Categories

Medical imaging 51 Epidemic data and models 40 Epidemic papers 8 Medical imaging papers 6 Clinical record analysis 2 Computational drug research 2

Keywords

dataset 2 deep-learning 2 chest-radiographs 1 chest-xray 1 chest-xray-images 1 cxr 1 cxr-images 1 foundation-models 1 image-classification 1 machine-learning 1 medical 1 medical-ai 1 medical-application 1 medical-image-analysis 1 medical-image-processing 1 medical-imaging 1 pytorch 1 torchxrayvision 1 transfer-learning 1 computed-tomography 1 computer-vision 1 covid-19 1 xray 1