awesome-research

:seedling: a curated list of tools to help you with your research/life; I built a front end around this repo, please use the link below [This repo is deprecated. Instead, I maintain all the contents using the following website]
https://github.com/emptymalei/awesome-research

Last synced: about 10 hours ago
JSON representation

Note Taking
- Editors
  - Moeditor
  - boostnote
  - Quiver
  - Findings
  - Papeeria
  - JaxEdit
  - Visual Studio Code, aka vscode
  - Hackmd.io
  - StackEdit
  - CMD markdown
  - Penflip - based and git like without math support.
  - Authorea
  - Dillinger
  - Pandoc Markdown
  - Marxico
  - Madoko
  - Markx
  - typora - situ live preview.
  - Haroopad
  - MarkdownPad
  - TeXStudio - Cross-platform LaTeX editor that stems from TeXMaker.
  - WinEdt - The LaTeX editor many people swear by.
  - TeXnicCenter - A quite old but free and decent editor for LaTeX.
  - LyX - Cross-platform WYSIWYM editor that uses LaTeX behind the scenes to render documents.
  - TeXshop - No-nonsense editor for LaTeX documents which is included in MacTeX.
  - TeXWorks - No-nonsense editor for LaTeX code, modeled after TeXShop, but this one is cross-platform.
  - TeXshop - No-nonsense editor for LaTeX documents which is included in MacTeX.
  - Visual Studio Code, aka vscode
  - Dillinger
  - Quiver
  - Findings
  - Papeeria
  - TeXStudio - Cross-platform LaTeX editor that stems from TeXMaker.
  - WinEdt - The LaTeX editor many people swear by.
  - TeXnicCenter - A quite old but free and decent editor for LaTeX.
  - LyX - Cross-platform WYSIWYM editor that uses LaTeX behind the scenes to render documents.
  - TeXshop - No-nonsense editor for LaTeX documents which is included in MacTeX.
  - Overleaf
- Notebooks for Researchers
  - Findings
  - Findings
- IPython Notebook
  - Reproduced Papers
  - More
- Mindmap
  - my-mind - mind).
  - beautiful Mind
  - Mindmup
  - mindmaps
  - gojs
  - jsmind
  - mindmaps
  - gojs
  - jsmind
  - beautiful Mind
- Concept Map and Diagrams
  - Gliffy
  - ProcessOn
  - Draw.io
  - ProcessOn
  - Draw.io
- Keep The Notes
  - latexdiff
  - Raneto
  - Realms
  - Tiddlywiki - linear notebook for capturing, organizing and sharing complex information.
  - eLabFTW
  - GitHub
  - GitHub
  - Raneto
  - latexdiff
  - Realms
  - Tiddlywiki - linear notebook for capturing, organizing and sharing complex information.
Be-Organized
- Version Control System
  - GitHub - in.
  - Jekyll
  - GitLab - based and self-hosted using its open-source code.
  - BitBucket
  - GitLab - git-service).
  - Gitea - hosted Git service written in Go.
  - Gogs - hosted Git service.
  - RhodeCode
  - Jekyll
  - Jekyll
  - BitBucket
  - Gitea - hosted Git service written in Go.
  - GitLab - git-service).
- Pomodoro
- GTD-Task Manager
  - Wikipedia
  - Here
  - Microsoft To Do
  - Google Keep
  - Evernote
  - Anydo
  - Todoist
  - Taskade
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Anydo
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Microsoft To Do
  - Google Keep
  - Anydo
  - Taskade
  - Taskade
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Agenda - focused note taking.
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Google Keep
  - Microsoft To Do
  - Google Keep
  - Google Keep
Cloud Services
- GTD-Task Manager
- Math and Programming Online
  - Google Colab
  - NextJournal
  - Kaggle - in free jupyter notebook.
  - Azure Notebooks
  - Datalore
  - CoCalc (SageMathCloud)
  - SageMaker
  - WolframAlpha
  - Mathematica Online
  - Azure Notebooks
- Plotting and Charting Online
  - plot.ly
  - Desmos
  - GeoGebra
  - graph.tk
  - Wolfram Alpha
  - plot.ly
  - GeoGebra
  - Wolfram Alpha
- Datasets
  - here
  - DRYAD
  - Figshare
  - Data.gov
  - GenBank
  - National Centers for Environmental Information
  - GEOSS Portal
  - US Virtual Astronomical Observatory
  - MAST: Barbara A. Mikulski Archive for Space Telescopes
  - Mikulski Archive for Space Telescopes
  - Archaeology Data Service
  - Open Energy Information (OpenEI)
  - Inter-university Consortium for Political and Social Research (ICPSR)
  - Institute for Quantitative Social Science (IQSS)
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - DRYAD
  - Data.gov
  - GEOSS Portal
  - US Virtual Astronomical Observatory
  - Mikulski Archive for Space Telescopes
  - Archaeology Data Service
  - Open Energy Information (OpenEI)
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
  - here
- Colors
Publishing and Sharing
- Writing
- Hosting
  - ReadtheDocs
  - Surge
  - Heroku
  - AWS
  - ReadtheDocs
- Blog and CMS
- Static Site Generator
  - Here is a nice website
  - Jekyll
  - Octopress
  - Hexo
  - Pelican
  - Nikola
  - Hugo
  - Hyperdraft
  - Pelican
  - Hugo
  - Hyperdraft
LaTeX
- Symbols
  - Detexify
- Graphing
  - TeX Example
  - TeX Example
- Fonts
  - Font Catalogue
  - Font Catalogue
- Templates
  - LaTeX Templates
- Tips
  - wikibooks - LaTeX
MISC
- Free Multimedia
  - Phylopic
  - CC Search
  - Unsplash
  - CC Search
  - Phylopic
  - CC Search
- Terminal
  - asciinema
- More
  - QR Code Generator
  - SHIELDS.io
  - TitleCap
  - On Being a Scientist
  - DiRT Directory
  - Online Whiteboard
  - MapInSeconds.com - pasting from a spreadsheet.
  - Unpay Wall
  - CC BY-SA
  - SHIELDS.io
  - MapInSeconds.com - pasting from a spreadsheet.
  - Unpay Wall
Presentation Tools
- Keep You Computer Awake
- Online Load and Edit
  - Prezi
  - slides.com
  - Slideas
  - Google Drive
  - Sway
  - slides.com
  - Google Drive
  - Google Drive
  - slides.com
  - Google Drive
  - Sway
  - Google Drive
  - Google Drive
  - Google Drive
  - Google Drive
  - Google Drive
  - Google Drive
  - Google Drive
  - Google Drive
  - Google Drive
  - Google Drive
  - Google Drive
  - Google Drive
  - Google Drive
  - Google Drive
  - Google Drive
  - Google Drive
  - Google Drive
  - Google Drive
  - Google Drive
  - Google Drive
  - Google Drive
  - Google Drive
- Use The Source
  - Impress.js
  - remark
  - Impress.js
  - CSSS
  - remark
- IPython/Jupyter Notebook
  - IPython/Jupyter Notebook
- LaTeX Beamer
  - Beamer
- Mathematica
  - Mathematica slides
  - Mathematica slides
- The Power of SVG
  - Inkscape
  - GIMP
  - Inkscape
  - GIMP
  - Inkscape
- Sharing Slides
  - Speaker Deck
  - GitHub pages
Programming
- Code Editors
  - Atom - platform`,`Plugins`): electron based editor with numerous plugins and easy modifications. Cross-platform with settings and plugins synchronized through the [sync-settings](https://atom.io/packages/sync-settings) plugin.
  - Sublime Text - platform`,`Plugins`): cross-platform, fast, and with plugins. Not free but can be freely used forever.
  - JetBrains - platform`,`Plugins`): beautiful IDE's with many debugging and editing modes integrated.
  - Atom - platform`,`Plugins`): electron based editor with numerous plugins and easy modifications. Cross-platform with settings and plugins synchronized through the [sync-settings](https://atom.io/packages/sync-settings) plugin.
  - Visual Studio Code, aka VS Code - platform`,`Plugins`): same technology as atom but faster than atom, and Microsoft made.
- Softwares
  - Mathematica
  - iPython Notebook
  - wakari.io
  - Matlab
  - Maple
  - RStudio
  - Mathematica
  - iPython Notebook
  - Matlab
  - RStudio
- Scientific Computing
  - Python
  - scipy
  - Julia
  - R
  - Rust
  - scipy
  - Julia
  - Rust
- Coding is Fun
Academic
- Self-plagiarism
  - wikipedia:Plagiarism#Self-plagiarism
- Investigate Papers
  - Paperscape
  - Peerus
  - SciRate - end for arXiv with rates from readers.
  - ArXiv Sanity Preserver
  - Iris.ai
  - Publish or Perish
  - PubChase
  - Connected Papers
  - Synthical - powered collaborative research environment. You can use it to get recommendations of articles based on reading history, simplify papers, find out what articles are trending, search articles by meaning (not just keywords), create and share folders of articles, see lists of articles from specific companies and universities, and add highlights.
  - ArXiv Sanity Preserver
  - Synthical - powered collaborative research environment. You can use it to get recommendations of articles based on reading history, simplify papers, find out what articles are trending, search articles by meaning (not just keywords), create and share folders of articles, see lists of articles from specific companies and universities, and add highlights.
- Get Yourself A Citable Code for Anything
  - Zenodo
- Get Yourself A Unique and Persistent Digital Identifier
  - orcid
  - orcid
- Open Science
  - Open Science Framework
- Bibliography
  - ReadCube/Papers - taking, and more. The former Papers has been rebanded as ReadCube Papers.
  - Mendeley
  - Zotero
  - Zotero Style Repository
  - JabRef
  - doi2bib
  - crossref
- Tips for Researchers
  - Ten Simple Rules by PLoS One - science specific, but rest the of articles are general enough for any researcher.
  - Ten Simple Rules by PLoS One - science specific, but rest the of articles are general enough for any researcher.
Pacifier
- Tips for Researchers
Online Discussions
- Forums and Q&A's
Open Source
- Open Licenses
  - Open Definition
- Use Licenses
Data Visualization and Graph Making
- Data Visualization
  - D3 js
  - Highcharts
  - Flot
  - JavaScript InfoVis Toolkit
  - Paper.js
  - seaborn
  - Plotnine
  - ggplot for python
  - bokeh
  - D3 js
  - Highcharts
  - Plotnine
  - plot.ly
  - Raphaël
  - plot.ly
- Graph Making
  - GeoGebra
  - TikZ
  - BoxPlotR - tool for generation of box plots.
  - Graphviz
  - 1
  - GeoGebra
  - LaTeXDraw
  - TikZ
  - 1
  - 1

Categories

Be-Organized 121 Cloud Services 91 Note Taking 68 Presentation Tools 52 Pacifier 36 Publishing and Sharing 29 Programming 27 Academic 25 Data Visualization and Graph Making 25 MISC 19 Open Source 7 LaTeX 7 Online Discussions 6

Sub Categories

GTD-Task Manager 106 Datasets 65 Editors 38 Tips for Researchers 38 Online Load and Edit 33 Data Visualization 15 Version Control System 13 More 12 Investigate Papers 11 Keep The Notes 11 Static Site Generator 11 Graph Making 10 Softwares 10 Mindmap 10 Math and Programming Online 10 Writing 9 Plotting and Charting Online 8 Scientific Computing 8 Bibliography 7 Use Licenses 6 Forums and Q&A's 6 Free Multimedia 6 Colors 5 Hosting 5 Pomodoro 5 The Power of SVG 5 Concept Map and Diagrams 5 Use The Source 5 Code Editors 5 Blog and CMS 4 Coding is Fun 4 Keep You Computer Awake 3 Notebooks for Researchers 2 Fonts 2 Graphing 2 IPython Notebook 2 Mathematica 2 Sharing Slides 2 Get Yourself A Unique and Persistent Digital Identifier 2 LaTeX Beamer 1 Symbols 1 Open Science 1 Open Licenses 1 IPython/Jupyter Notebook 1 Templates 1 Get Yourself A Citable Code for Anything 1 Terminal 1 Self-plagiarism 1 Tips 1

Keywords

selfhosted 1 self-hosted 1 privacy 1 hosting 1 free-software 1 cloud 1 awesome-list 1 awesome 1