Apache-Airflow-Guide

Apache Airflow Guide
https://github.com/mikeroyal/Apache-Airflow-Guide

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Bioinformatics Learning Resources
Bioinformatics Tools, Libraries, and Frameworks
- Bioconductor - throughput genomic data. Bioconductor uses the [R statistical programming language](https://www.r-project.org/about.html), and is open source and open development. It has two releases each year, and an active user community. Bioconductor is also available as an [AMI (Amazon Machine Image)](https://docs.aws.amazon.com/AWSEC2/latest/UserGuide/AMIs.html) and [Docker images](https://docs.docker.com/engine/reference/commandline/images/).
- Bioconda
- UniProt - quality and freely accessible set of protein sequences annotated with functional information.
- Bowtie 2 - efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (mammalian) genomes.
- Biopython
- BioRuby
- BioJava
- BioPHP
- Avogadro - platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible high quality rendering and a powerful plugin architecture.
- Ascalaph Designer
- Anduril - thoughput data in biomedical research, and the platform is fully extensible by third parties. Ready-made tools support data visualization, DNA/RNA/ChIP-sequencing, DNA/RNA microarrays, cytometry and image analysis.
- Galaxy - based platform for accessible, reproducible, and transparent computational biomedical research. It allows users without programming experience to easily specify parameters and run individual tools as well as larger workflows. It also captures run information so that any user can repeat and understand a complete computational analysis.
- PathVisio - source pathway analysis and drawing software which allows drawing, editing, and analyzing biological pathways. It is developed in Java and can be extended with plugins.
- Orange
- Basic Local Alignment Search Tool
- OSIRIS - domain, free, and open source STR analysis software designed for clinical, forensic, and research use, and has been validated for use as an expert system for single-source samples.
- NCBI BioSystems
- Anduril - thoughput data in biomedical research, and the platform is fully extensible by third parties. Ready-made tools support data visualization, DNA/RNA/ChIP-sequencing, DNA/RNA microarrays, cytometry and image analysis.
- Anduril - thoughput data in biomedical research, and the platform is fully extensible by third parties. Ready-made tools support data visualization, DNA/RNA/ChIP-sequencing, DNA/RNA microarrays, cytometry and image analysis.
- Galaxy - based platform for accessible, reproducible, and transparent computational biomedical research. It allows users without programming experience to easily specify parameters and run individual tools as well as larger workflows. It also captures run information so that any user can repeat and understand a complete computational analysis.
C/C++ Learning Resources
- C - purpose, high-level language that was originally developed by Dennis M. Ritchie to develop the UNIX operating system at Bell Labs. It supports structured programming, lexical variable scope, and recursion, with a static type system. C also provides constructs that map efficiently to typical machine instructions, which makes it one was of the most widely used programming languages today.
- Embedded C - committee) to address issues that exist between C extensions for different [embedded systems](https://en.wikipedia.org/wiki/Embedded_system). The extensions hep enhance microprocessor features such as fixed-point arithmetic, multiple distinct memory banks, and basic I/O operations. This makes Embedded C the most popular embedded software language in the world.
- C & C++ Developer Tools from JetBrains
- Open source C++ libraries on cppreference.com
- C++ Graphics libraries
- C++ Libraries in MATLAB
- Google C++ Style Guide
- Introduction C++ Education course on Google Developers
- C++ style guide for Fuchsia
- Chromium C++ Style Guide
- C++ Core Guidelines
- C++ Style Guide for ROS
- Learn C++
- Learn C : An Interactive C Tutorial
- C++ Online Training Courses on LinkedIn Learning
- C++ Tutorials on W3Schools
- Learn C Programming Online Courses on edX
- Learn C++ with Online Courses on edX
- Learn C++ on Codecademy
- Coding for Everyone: C and C++ course on Coursera
- C++ For C Programmers on Coursera
- C++ Online Courses on Udemy
- Top C Courses on Udemy
- Basics of Embedded C Programming for Beginners on Udemy
- C++ For Programmers Course on Udacity
- C++ Fundamentals Course on Pluralsight
- C++ - platform language that can be used to build high-performance applications developed by Bjarne Stroustrup, as an extension to the C language.
- C++ Tools and Libraries Articles
- C++ Style Guide for ROS
C/C++ Tools, Libraries and Frameworks
- AWS SDK for C++
- ReSharper C++
- AppCode - fixes to resolve them automatically. AppCode provides lots of code inspections for Objective-C, Swift, C/C++, and a number of code inspections for other supported languages. All code inspections are run on the fly.
- CLion - platform IDE for C and C++ developers developed by JetBrains.
- Code::Blocks
- Conan
- High Performance Computing (HPC) SDK
- Boost - edge C++. Boost has been a participant in the annual Google Summer of Code since 2007, in which students develop their skills by working on Boost Library development.
- Automake
- Cmake - source, cross-platform family of tools designed to build, test and package software. CMake is used to control the software compilation process using simple platform and compiler independent configuration files, and generate native makefiles and workspaces that can be used in the compiler environment of your choice.
- GDB
- GCC - C, Fortran, Ada, Go, and D, as well as libraries for these languages.
- GSL - squares fitting. There are over 1000 functions in total with an extensive test suite.
- OpenGL Extension Wrangler Library (GLEW) - platform open-source C/C++ extension loading library. GLEW provides efficient run-time mechanisms for determining which OpenGL extensions are supported on the target platform.
- Libtool
- Maven
- TAU (Tuning And Analysis Utilities) - based sampling. All C++ language features are supported including templates and namespaces.
- Clang - C, C++ and Objective-C++ compiler when targeting X86-32, X86-64, and ARM (other targets may have caveats, but are usually easy to fix). Clang is used in production to build performance-critical software like Google Chrome or Firefox.
- OpenCV - time applications. Cross-Platform C++, Python and Java interfaces support Linux, MacOS, Windows, iOS, and Android.
- Oat++ - efficient web application. It's zero-dependency and easy-portable.
- Cython
- Infer - C, and C. Infer is written in [OCaml](https://ocaml.org/).
- Azure SDK for C++
- Azure SDK for C
- C++ Client Libraries for Google Cloud Services
- Vcpkg
- CppSharp
- JavaCPP
- Spdlog - only/compiled, C++ logging library.
C# Learning Resources
- C# programming with Visual Studio Code
- Advanced Topics in C# by Udemy
- The complete C# tutorial
- Unity C# Survival Guide
- RabbitMQ .NET/C# Client API
- C# - oriented programming language developed by Microsoft to write any application using the C# programming language on the .NET platform.
- C# Tutorial by W3Schools
- Learning C#
Computer Vision Learning Resources
Computer Vision Tools, Libraries, and Frameworks
- Deep Learning Toolbox™ - term memory (LSTM) networks to perform classification and regression on image, time-series, and text data. You can build network architectures such as generative adversarial networks (GANs) and Siamese networks using automatic differentiation, custom training loops, and shared weights. With the Deep Network Designer app, you can design, analyze, and train networks graphically. It can exchange models with TensorFlow™ and PyTorch through the ONNX format and import models from TensorFlow-Keras and Caffe. The toolbox supports transfer learning with DarkNet-53, ResNet-50, NASNet, SqueezeNet and many other pretrained models.
- Reinforcement Learning Toolbox™ - making algorithms for complex applications such as resource allocation, robotics, and autonomous systems.
- Deep Learning HDL Toolbox™ - built bitstreams for running a variety of deep learning networks on supported Xilinx® and Intel® FPGA and SoC devices. Profiling and estimation tools let you customize a deep learning network by exploring design, performance, and resource utilization tradeoffs.
- Parallel Computing Toolbox™ - intensive problems using multicore processors, GPUs, and computer clusters. High-level constructs such as parallel for-loops, special array types, and parallelized numerical algorithms enable you to parallelize MATLAB® applications without CUDA or MPI programming. The toolbox lets you use parallel-enabled functions in MATLAB and other toolboxes. You can use the toolbox with Simulink® to run multiple simulations of a model in parallel. Programs and models can run in both interactive and batch modes.
- Microsoft AirSim - source, cross platform, and supports [software-in-the-loop simulation](https://www.mathworks.com/help///ecoder/software-in-the-loop-sil-simulation.html) with popular flight controllers such as PX4 & ArduPilot and [hardware-in-loop](https://www.ni.com/en-us/innovations/white-papers/17/what-is-hardware-in-the-loop-.html) with PX4 for physically and visually realistic simulations. It is developed as an Unreal plugin that can simply be dropped into any Unreal environment. AirSim is being developed as a platform for AI research to experiment with deep learning, computer vision and reinforcement learning algorithms for autonomous vehicles.
- ROS Toolbox
- Robotics Toolbox™ - holonomic vehicle. The Toolbox also including a detailed Simulink model for a quadrotor flying robot.
- Computer Vision Toolbox™
- Model Predictive Control Toolbox™ - loop simulations, you can evaluate controller performance.
- Vision HDL Toolbox™ - streaming algorithms for the design and implementation of vision systems on FPGAs and ASICs. It provides a design framework that supports a diverse set of interface types, frame sizes, and frame rates. The image processing, video, and computer vision algorithms in the toolbox use an architecture appropriate for HDL implementations.
- Automated Driving Toolbox™ - eye-view plot and scope for sensor coverage, detections and tracks, and displays for video, lidar, and maps. The toolbox lets you import and work with HERE HD Live Map data and OpenDRIVE® road networks. It also provides reference application examples for common ADAS and automated driving features, including FCW, AEB, ACC, LKA, and parking valet. The toolbox supports C/C++ code generation for rapid prototyping and HIL testing, with support for sensor fusion, tracking, path planning, and vehicle controller algorithms.
- UAV Toolbox
- Lidar Toolbox™ - camera cross calibration for workflows that combine computer vision and lidar processing.
- Mapping Toolbox™
- Statistics and Machine Learning Toolbox™
- Partial Differential Equation Toolbox™
- Data Acquisition Toolbox™
- LRSLibrary - Rank and Sparse Tools for Background Modeling and Subtraction in Videos. The library was designed for moving object detection in videos, but it can be also used for other computer vision and machine learning problems.
- Image Processing Toolbox™ - standard algorithms and workflow apps for image processing, analysis, visualization, and algorithm development. You can perform image segmentation, image enhancement, noise reduction, geometric transformations, image registration, and 3D image processing.
- OpenCV - time computer vision applications. The C++, Python, and Java interfaces support Linux, MacOS, Windows, iOS, and Android.
C# Tools, Libraries and Frameworks
- Visual Studio - rich application that can be used for many aspects of software development. Visual Studio makes it easy to edit, debug, build, and publish your app. By using Microsoft software development platforms such as Windows API, Windows Forms, Windows Presentation Foundation, and Windows Store.
- ANTLR (ANother Tool for Language Recognition)
- Mono
- Uno Platform - based code (C# and XAML) to run on iOS, Android, macOS, WebAssembly, Linux and Windows 7. It provides the full definitions of the UWP [Windows 10 2004 (19041)](https://docs.microsoft.com/en-us/windows/uwp/whats-new/windows-10-build-19041), and the implementation of a growing number of parts of the UWP API, such as Windows.UI.Xaml, to enable UWP and WinUI applications to run on these platforms.
- Rider - platform .NET IDE devloped by JetBrains to develop .NET, ASP.NET, .NET Core, Xamarin; or Unity applications for Windows, Mac, Linux.
- Resharper - the-fly code quality analysis for C#, VB.NET, XAML, ASP.NET, ASP.NET MVC, JavaScript, TypeScript, CSS, HTML, and XML. Letting you know right away if your code needs to be improved.
- dotPeek
- dotTrace
- dotMemory
- dotCover - the-fly which unit tests are affected by your latest code changes, and automatically re-runs the affected tests for you. The continuous testing mode can be switched on for any unit test session.
- Json.NET - performance JSON framework for .NET.
- .NET Fiddle
- Octopus Deploy
- Appveyor - based continuous integration system that integrates natively with your source control and allows CI configuration files to live alongside your projects.
- MSBuild
- Bot Framework - source, visual authoring canvas for developers and multi-disciplinary teams to design and build conversational experiences with Language.
- Quasar - weight remote administration tool coded in C#. The usage ranges from user support through day-to-day administrative work to employee monitoring. Providing high stability and an easy-to-use user interface, Quasar is the perfect remote administration solution for you.
- CodeMaid
- AutoRest - Specification) format. It Supports C#, PowerShell, Go, Java, Node.js, TypeScript, Python, Ruby.
- Markdig
- AppHarbor - as-a-Service that let's developers deploy and scale any standard .NET application to the cloud.
- Roslyn
CUDA Learning Resources
- CUDA - accelerated applications, the sequential part of the workload runs on the CPU, which is optimized for single-threaded. The compute intensive portion of the application runs on thousands of GPU cores in parallel. When using CUDA, developers can program in popular languages such as C, C++, Fortran, Python and MATLAB.
- CUDA Toolkit Documentation
- CUDA Quick Start Guide
- CUDA on WSL
- NVIDIA Deep Learning cuDNN Documentation
- CUDA GPU support for TensorFlow
CUDA Tools Libraries, and Frameworks
- CUDA Toolkit - accelerated applications. The CUDA Toolkit allows you can develop, optimize, and deploy your applications on GPU-accelerated embedded systems, desktop workstations, enterprise data centers, cloud-based platforms and HPC supercomputers. The toolkit includes GPU-accelerated libraries, debugging and optimization tools, a C/C++ compiler, and a runtime library to build and deploy your application on major architectures including x86, Arm and POWER.
- CUDA-X HPC - X HPC includes highly tuned kernels essential for high-performance computing (HPC).
- CuPy - compatible multi-dimensional array on CUDA. CuPy consists of the core multi-dimensional array class, cupy.ndarray, and many functions on it. It supports a subset of numpy.ndarray interface.
- cuDF - like API that will be familiar to data engineers & data scientists, so they can use it to easily accelerate their workflows without going into the details of CUDA programming.
- ArrayFire - purpose library that simplifies the process of developing software that targets parallel and massively-parallel architectures including CPUs, GPUs, and other hardware acceleration devices.
- AresDB - powered real-time analytics storage and query engine. It features low query latency, high data freshness and highly efficient in-memory and on disk storage management.
- NVIDIA Container Toolkit - container) and utilities to automatically configure containers to leverage NVIDIA GPUs.
- CUTLASS - performance matrix-multiplication (GEMM) at all levels and scales within CUDA. It incorporates strategies for hierarchical decomposition and data movement similar to those used to implement cuBLAS.
- CUB
- Thrust - level interface greatly enhances programmer productivity while enabling performance portability between GPUs and multicore CPUs.
- Arraymancer - dimensional array) project in Nim. The main focus is providing a fast and ergonomic CPU, Cuda and OpenCL ndarray library on which to build a scientific computing ecosystem.
- Kintinuous - time dense visual SLAM system capable of producing high quality globally consistent point and mesh reconstructions over hundreds of metres in real-time with only a low-cost commodity RGB-D sensor.
Deep Learning Learning Resources
- Autonomous Systems - Microsoft AI
- Machine Learning for Everyone Courses | DataCamp
Deep Learning Tools, Libraries, and Frameworks
- NVIDIA DLSS (Deep Learning Super Sampling)
- AMD FidelityFX Super Resolution (FSR) - quality solution for producing high resolution frames from lower resolution inputs. It uses a collection of cutting-edge Deep Learning algorithms with a particular emphasis on creating high-quality edges, giving large performance improvements compared to rendering at native resolution directly. FSR enables “practical performance” for costly render operations, such as hardware ray tracing for the AMD RDNA™ and AMD RDNA™ 2 architectures.
- Intel Xe Super Sampling (XeSS) - cores to run XeSS. The GPUs will have Xe Matrix eXtenstions matrix (XMX) engines for hardware-accelerated AI processing. XeSS will be able to run on devices without XMX, including integrated graphics, though, the performance of XeSS will be lower on non-Intel graphics cards because it will be powered by [DP4a instruction](https://www.intel.com/content/dam/www/public/us/en/documents/reference-guides/11th-gen-quick-reference-guide.pdf).
Java Learning Resources
Java Tools, Libraries, and Frameworks
- DBeaver - platform database tool for developers, SQL programmers, database administrators and analysts. Supports any database which has JDBC driver (which basically means - ANY database). EE version also supports non-JDBC datasources (MongoDB, Cassandra, Redis, DynamoDB, etc).
- Java SE
- JDK Development Tools
- IntelliJ IDEA
- RxJava - based programs by using observable sequences. It extends the [observer pattern](http://en.wikipedia.org/wiki/Observer_pattern) to support sequences of data/events and adds operators that allow you to compose sequences together declaratively while abstracting away concerns about things like low-level threading, synchronization, thread-safety and concurrent data structures.
- Guava
- Retrofit - safe HTTP client for Android and Java develped by Square.
- Apache Flink - and batch-processing capabilities with elegant and fluent APIs in Java and Scala.
- Fastjson

Programming Languages

Python 17 C++ 11 C# 7 Java 5 Scala 5 HTML 3 MATLAB 3 Kotlin 3 C 2 CMake 1

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Apache-Airflow-Guide

Bioinformatics Learning Resources

Bioinformatics Tools, Libraries, and Frameworks

C/C++ Learning Resources

C/C++ Tools, Libraries and Frameworks

C# Learning Resources

Computer Vision Learning Resources

Computer Vision Tools, Libraries, and Frameworks

C# Tools, Libraries and Frameworks

CUDA Learning Resources

CUDA Tools Libraries, and Frameworks

Deep Learning Learning Resources

Deep Learning Tools, Libraries, and Frameworks

Java Learning Resources

Java Tools, Libraries, and Frameworks