Awesome-LatchBio

A curated list of awesome Bioinformatics pipelines and software available on LatchBio
https://github.com/nahid18/Awesome-LatchBio

Last synced: 3 days ago
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Table of Contents
- Genome Assembly
  - Circlator
  - github repo - 2015](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0849-0)
  - shasta
  - latch source code - 2020](https://pubmed.ncbi.nlm.nih.gov/32686750) | [documentation](https://chanzuckerberg.github.io/shasta)
- Sequence alignment
  - Latch Workflow
  - Latch Workflow - /blob/main/doc/last-papers.rst) | [Documentation](https://gitlab.com/mcfrith/last/-/tree/main)
  - Latch Workflow - /blob/main/doc/last-papers.rst) | [Documentation](https://gitlab.com/mcfrith/last/-/tree/main)
- Multiple sequence alignment
- Phylogenetics
- CRISPR
  - CRISPRbuilderTB
  - Paper
- RNA Design and Analysis
  - Latch Workflow - lab/NUPACK) | [Related Papers](https://docs.nupack.org/#citation) | [Documentation](https://docs.nupack.org/model/)
  - Latch Workflow - lab/NUPACK) | [Related Papers](https://docs.nupack.org/#citation) | [Documentation](https://docs.nupack.org/utilities/)
  - NUPACK Utilities
- General use
  - Latch Workflow
- Contributors
  - Your Repository's Stats
- Codon analyses
  - BioKIT
  - BioKIT

Programming Languages

Categories

Table of Contents 30

Sub Categories

Multiple sequence alignment 11 Genome Assembly 4 RNA Design and Analysis 3 Sequence alignment 3 Phylogenetics 3 Codon analyses 2 CRISPR 2 General use 1 Contributors 1

Keywords

systematics 1 python 1 phylogenomics 1 phylogenetics 1 genomics 1 evolutionary-biology 1 evolution 1 bioinformatics 1 sequencing 1 pacbio 1 nanopore 1 long-read 1 dna 1 de-novo 1 assembly 1